Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_006725527 18 1935 XP_006714809 18 1935 NP_001004058 17 3301 NP_006824 17 3301 NP_001004462 17 4312 NP_001040 17 4312 NP_783853 17 4312 NP_001230028 17 4312 NP_000555 17 4312 XP_005247166 17 4312 NP_001073909 17 4312 NP_001004463 17 4312 NP_001004464 17 4312 NP_775869 16 5631 NP_945344 16 5631 XP_005257358 16 5631 XP_006719420 16 5631 NP_001136336 16 7355 NP_001167594 16 7355 XP_006722587 16 7355 XP_006721417 16 7355 XP_006721416 16 7355 NP_001166031 15 9605 NP_001044 15 9605 NP_110447 15 9605 NP_001683 15 9605 NP_001265616 15 9605 NP_001042 15 9605 NP_001185951 15 9605 NP_055526 15 9605 NP_659403 15 9605 NP_001171175 15 9605 NP_055211 15 9605 NP_001684 15 9605 XP_005261778 15 9605 XP_006724374 15 9605 XP_006721168 15 9605 XP_005255778 15 9605 XP_005255776 15 9605 XP_006720999 15 9605 XP_006716792 15 9605 XP_005251441 15 9605 XP_005251440 15 9605 XP_006716786 15 9605 XP_005251439 15 9605 XP_006715287 15 9605 XP_006715286 15 9605 XP_005264425 15 9605 NP_542198 15 9605>XP_006725527 Length = 1322 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC +L+ILS Sbjct: 80 LCSILVILS 88>XP_006714809 Length = 1574 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC +L+ILS Sbjct: 80 LCSILVILS 88>NP_001004058 Length = 307 Score = 16.9 bits (32), Expect = 3301 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 LCHVLI 6 LCHVL+ Sbjct: 140 LCHVLV 145>NP_006824 Length = 327 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LCHVLIILS 9 LCH L +LS Sbjct: 263 LCHCLPVLS 271>NP_001004462 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 CHVLIILS 9 C VLI+LS Sbjct: 209 CFVLIVLS 216>NP_001040 Length = 391 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 LCHVLII 7 LC+VLII Sbjct: 241 LCYVLII 247>NP_783853 Length = 420 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 +C +L+ILS Sbjct: 351 ICFILLILS 359>NP_001230028 Length = 378 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 +C +L+ILS Sbjct: 351 ICFILLILS 359>NP_000555 Length = 420 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 +C +L+ILS Sbjct: 351 ICFILLILS 359>XP_005247166 Length = 477 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC +LIIL+ Sbjct: 7 LCAILIILA 15>NP_001073909 Length = 477 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC +LIIL+ Sbjct: 7 LCAILIILA 15>NP_001004463 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 CHVLIILS 9 C VLI+LS Sbjct: 209 CFVLIVLS 216>NP_001004464 Length = 311 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 CHVLIILS 9 C VLI+LS Sbjct: 209 CFVLIVLS 216>NP_775869 Length = 921 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CHVLII 7 CH+LII Sbjct: 427 CHLLII 432>NP_945344 Length = 411 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LCHVLII 7 LCH LI+ Sbjct: 126 LCHQLIV 132>XP_005257358 Length = 284 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 LCHVLII 7 LCH LI+ Sbjct: 126 LCHQLIV 132>XP_006719420 Length = 949 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 CHVLII 7 CH+LII Sbjct: 456 CHLLII 461>NP_001136336 Length = 2521 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC+ +IIL+ Sbjct: 1690 LCYFIIILN 1698>NP_001167594 Length = 685 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LCHVLIILS 9 LC V IILS Sbjct: 20 LCAVRIILS 28>XP_006722587 Length = 685 Score = 15.8 bits (29), Expect = 7355 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 LCHVLIILS 9 LC V IILS Sbjct: 20 LCAVRIILS 28>XP_006721417 Length = 2497 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC+ +IIL+ Sbjct: 1666 LCYFIIILN 1674>XP_006721416 Length = 2504 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 LCHVLIILS 9 LC+ +IIL+ Sbjct: 1673 LCYFIIILN 1681>NP_001166031 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 219 LCYLLIVV 226>NP_001044 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 219 LCYLLIVV 226>NP_110447 Length = 957 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCHVLIIL 8 LC VL++L Sbjct: 8 LCMVLVLL 15>NP_001683 Length = 513 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 HVLIILS 9 HVL+IL+ Sbjct: 286 HVLVILT 292>NP_001265616 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 224 LCYLLIVV 231>NP_001042 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 224 LCYLLIVV 231>NP_001185951 Length = 1012 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 386 CHILI 390>NP_055526 Length = 991 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 386 CHILI 390>NP_659403 Length = 2179 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 2064 CHILI 2068>NP_001171175 Length = 715 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 600 CHILI 604>NP_055211 Length = 854 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCHVLIILS 9 LC L++LS Sbjct: 277 LCDQLVVLS 285>NP_001684 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 HVLIILS 9 HVL+IL+ Sbjct: 292 HVLVILT 298>XP_005261778 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 224 LCYLLIVV 231>XP_006724374 Length = 418 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 224 LCYLLIVV 231>XP_006721168 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 386 CHILI 390>XP_005255778 Length = 991 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 386 CHILI 390>XP_005255776 Length = 1012 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 386 CHILI 390>XP_006720999 Length = 364 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 LCHVLIIL 8 LC++LI++ Sbjct: 219 LCYLLIVV 226>XP_006716792 Length = 715 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 600 CHILI 604>XP_005251441 Length = 715 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 600 CHILI 604>XP_005251440 Length = 716 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 601 CHILI 605>XP_006716786 Length = 2179 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 2064 CHILI 2068>XP_005251439 Length = 2179 Score = 15.4 bits (28), Expect = 9605 Identities = 4/5 (80%), Positives = 5/5 (100%) Query: 2 CHVLI 6 CH+LI Sbjct: 2064 CHILI 2068>XP_006715287 Length = 615 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCHVLIIL 8 LC VL++L Sbjct: 8 LCMVLVLL 15>XP_006715286 Length = 945 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 LCHVLIIL 8 LC VL++L Sbjct: 8 LCMVLVLL 15>XP_005264425 Length = 471 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 HVLIILS 9 HVL+IL+ Sbjct: 244 HVLVILT 250>NP_542198 Length = 829 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 LCHVLIILS 9 LC L++LS Sbjct: 252 LCDQLVVLS 260Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.349 0.158 0.514 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 531,937 Number of extensions: 784 Number of successful extensions: 49 Number of sequences better than 10000.0: 49 Number of HSP's gapped: 49 Number of HSP's successfully gapped: 49 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |