Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 17 4312 NP_001075109 17 4312 NP_001136336 17 4312 XP_006721417 17 4312 XP_006721416 17 4312 NP_001093321 16 5631 NP_001038945 16 5631 NP_001034450 16 5631 NP_001278310 16 5631 NP_001120965 16 7355 NP_066187 16 7355 NP_001139 16 7355 XP_006714257 16 7355 XP_006714256 16 7355 XP_006714255 16 7355 XP_005263005 16 7355 XP_006714254 16 7355 XP_006714253 16 7355 XP_005263002 16 7355 XP_005262999 16 7355 XP_006714252 16 7355 XP_006714251 16 7355 XP_006714250 16 7355>NP_008835 Length = 4128 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LASRLLELA 9 LAS LLELA Sbjct: 1510 LASGLLELA 1518>NP_001075109 Length = 4097 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 LASRLLELA 9 LAS LLELA Sbjct: 1510 LASGLLELA 1518>NP_001136336 Length = 2521 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LASRLLELA 9 +A RLLELA Sbjct: 784 VAERLLELA 792>XP_006721417 Length = 2497 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LASRLLELA 9 +A RLLELA Sbjct: 784 VAERLLELA 792>XP_006721416 Length = 2504 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LASRLLELA 9 +A RLLELA Sbjct: 767 VAERLLELA 775>NP_001093321 Length = 474 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SRLLELA 9 SRLLELA Sbjct: 7 SRLLELA 13>NP_001038945 Length = 474 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SRLLELA 9 SRLLELA Sbjct: 7 SRLLELA 13>NP_001034450 Length = 474 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SRLLELA 9 SRLLELA Sbjct: 7 SRLLELA 13>NP_001278310 Length = 474 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 SRLLELA 9 SRLLELA Sbjct: 7 SRLLELA 13>NP_001120965 Length = 1863 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1017 LASRLIEV 1024>NP_066187 Length = 1872 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1026 LASRLIEV 1033>NP_001139 Length = 3957 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1026 LASRLIEV 1033>XP_006714257 Length = 4145 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1068 LASRLIEV 1075>XP_006714256 Length = 1901 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1088 LASRLIEV 1095>XP_006714255 Length = 1970 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1076 LASRLIEV 1083>XP_005263005 Length = 2019 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1058 LASRLIEV 1065>XP_006714254 Length = 2049 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1088 LASRLIEV 1095>XP_006714253 Length = 2069 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1088 LASRLIEV 1095>XP_005263002 Length = 4072 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1026 LASRLIEV 1033>XP_005262999 Length = 4147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1070 LASRLIEV 1077>XP_006714252 Length = 4153 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1076 LASRLIEV 1083>XP_006714251 Length = 4165 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1088 LASRLIEV 1095>XP_006714250 Length = 4190 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 LASRLLEL 8 LASRL+E+ Sbjct: 1080 LASRLIEV 1087Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.137 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 305,651 Number of extensions: 229 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |