Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001275701 19 665 NP_004561 19 665 NP_001275703 19 665 XP_005253450 19 665 XP_006719151 19 665 NP_076918 17 2528 NP_008831 17 2528 NP_001420 16 5631 NP_001265580 16 5631 NP_002874 16 5631 XP_006724352 16 5631 XP_005261753 16 5631 XP_005261752 16 5631 XP_006724228 16 5631 NP_067091 16 7355 NP_002166 16 7355 NP_066401 16 7355 NP_002161 15 9605 NP_001188357 15 9605 NP_056345 15 9605 NP_065996 15 9605 XP_005270063 15 9605 XP_005270062 15 9605 XP_005270061 15 9605 XP_006712471 15 9605>NP_001275701 Length = 1486 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAQMSAINP 9 LAQMSAI+P Sbjct: 1217 LAQMSAISP 1225>NP_004561 Length = 1445 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAQMSAINP 9 LAQMSAI+P Sbjct: 1176 LAQMSAISP 1184>NP_001275703 Length = 1264 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAQMSAINP 9 LAQMSAI+P Sbjct: 995 LAQMSAISP 1003>XP_005253450 Length = 1486 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAQMSAINP 9 LAQMSAI+P Sbjct: 1217 LAQMSAISP 1225>XP_006719151 Length = 1486 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAQMSAINP 9 LAQMSAI+P Sbjct: 1217 LAQMSAISP 1225>NP_076918 Length = 189 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LAQMSAINP 9 LAQMS I+P Sbjct: 41 LAQMSRISP 49>NP_008831 Length = 190 Score = 17.3 bits (33), Expect = 2528 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 LAQMSAINP 9 LAQMS I+P Sbjct: 42 LAQMSRISP 50>NP_001420 Length = 2414 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 739 LAQPGALNP 747>NP_001265580 Length = 587 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 228 LAQAFAVNP 236>NP_002874 Length = 587 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 228 LAQAFAVNP 236>XP_006724352 Length = 587 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 228 LAQAFAVNP 236>XP_005261753 Length = 628 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 269 LAQAFAVNP 277>XP_005261752 Length = 642 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 283 LAQAFAVNP 291>XP_006724228 Length = 2388 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQ A+NP Sbjct: 713 LAQPGALNP 721>NP_067091 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQM I+P Sbjct: 41 LAQMGRISP 49>NP_002166 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQM I+P Sbjct: 41 LAQMGRISP 49>NP_066401 Length = 189 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQM I+P Sbjct: 41 LAQMGRISP 49>NP_002161 Length = 189 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAQMSAINP 9 LAQM I+P Sbjct: 41 LAQMRRISP 49>NP_001188357 Length = 384 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 QMSAINP 9 Q+S++NP Sbjct: 167 QLSSVNP 173>NP_056345 Length = 452 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 QMSAINP 9 Q+S++NP Sbjct: 235 QLSSVNP 241>NP_065996 Length = 3184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LAQMSAIN 8 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_005270063 Length = 2005 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LAQMSAIN 8 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_005270062 Length = 3184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LAQMSAIN 8 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_005270061 Length = 3184 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LAQMSAIN 8 L Q+SAIN Sbjct: 591 LEQLSAIN 598>XP_006712471 Length = 384 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 QMSAINP 9 Q+S++NP Sbjct: 167 QLSSVNP 173Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.314 0.120 0.314 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 273,229 Number of extensions: 294 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |