Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_057502 19 869 NP_861969 19 869 NP_000259 19 869 NP_861968 19 869 NP_861966 19 869 NP_861970 19 869 NP_861546 19 869 NP_861967 19 869 NP_005474 17 4312 NP_149059 16 5631 NP_055752 15 9605 NP_001230123 15 9605 NP_057661 15 9605 XP_006717782 15 9605>NP_057502 Length = 590 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 384 LAEKAQITE 392>NP_861969 Length = 507 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 301 LAEKAQITE 309>NP_000259 Length = 595 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 384 LAEKAQITE 392>NP_861968 Length = 507 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 301 LAEKAQITE 309>NP_861966 Length = 548 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 342 LAEKAQITE 350>NP_861970 Length = 590 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 384 LAEKAQITE 392>NP_861546 Length = 590 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 384 LAEKAQITE 392>NP_861967 Length = 549 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 LAEKAQITK 9 LAEKAQIT+ Sbjct: 343 LAEKAQITE 351>NP_005474 Length = 956 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 AEKAQITK 9 AEKA+IT+ Sbjct: 440 AEKAEITR 447>NP_149059 Length = 426 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 AEKAQIT 8 AEKAQ+T Sbjct: 252 AEKAQLT 258>NP_055752 Length = 1132 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAEKAQITK 9 +AE QITK Sbjct: 726 IAEMLQITK 734>NP_001230123 Length = 522 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAEKAQITK 9 +AE QITK Sbjct: 116 IAEMLQITK 124>NP_057661 Length = 208 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 LAEKAQIT 8 LA+K QIT Sbjct: 130 LADKRQIT 137>XP_006717782 Length = 1089 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 LAEKAQITK 9 +AE QITK Sbjct: 683 IAEMLQITK 691Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.115 0.259 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 307,815 Number of extensions: 331 Number of successful extensions: 14 Number of sequences better than 10000.0: 14 Number of HSP's gapped: 14 Number of HSP's successfully gapped: 14 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |