Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004295 18 1482 NP_001074003 17 2528 XP_005254452 17 2528 XP_005254451 17 2528 NP_060862 17 3301 XP_005263172 17 3301 NP_000693 17 4312 NP_036270 17 4312 NP_001274064 17 4312 NP_115548 16 5631 XP_005249939 16 5631 XP_006715854 16 5631 XP_006715853 16 5631 NP_056342 16 7355 NP_001159743 15 9605 NP_001273721 15 9605 NP_056042 15 9605 NP_598368 15 9605 XP_006724046 15 9605 XP_006724045 15 9605 XP_006724044 15 9605 XP_005271879 15 9605 XP_006716107 15 9605 NP_443199 15 9605>NP_004295 Length = 1620 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KVGSVRKLR 9 K GSVRKLR Sbjct: 128 KGGSVRKLR 136>NP_001074003 Length = 2214 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KVGSVRKLR 9 K+G++RKLR Sbjct: 177 KLGALRKLR 185>XP_005254452 Length = 2188 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KVGSVRKLR 9 K+G++RKLR Sbjct: 177 KLGALRKLR 185>XP_005254451 Length = 2214 Score = 17.3 bits (33), Expect = 2528 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KVGSVRKLR 9 K+G++RKLR Sbjct: 177 KLGALRKLR 185>NP_060862 Length = 2104 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KVGSVRKL 8 +VGSVRK+ Sbjct: 1718 RVGSVRKI 1725>XP_005263172 Length = 2104 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KVGSVRKL 8 +VGSVRK+ Sbjct: 1718 RVGSVRKI 1725>NP_000693 Length = 1020 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 GSVRKLR 9 GSVRK+R Sbjct: 463 GSVRKMR 469>NP_036270 Length = 560 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 VGSVRKL 8 VGS+RKL Sbjct: 53 VGSIRKL 59>NP_001274064 Length = 469 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KVGSVRKLR 9 K+G ++KLR Sbjct: 12 KIGKMKKLR 20>NP_115548 Length = 1316 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KVGSVRKL 8 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>XP_005249939 Length = 1324 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KVGSVRKL 8 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>XP_006715854 Length = 1327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KVGSVRKL 8 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>XP_006715853 Length = 1327 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KVGSVRKL 8 K+GS+RK+ Sbjct: 941 KIGSLRKV 948>NP_056342 Length = 808 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VGSVRKLR 9 +GSV KLR Sbjct: 564 LGSVEKLR 571>NP_001159743 Length = 1277 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KVGSVRKLR 9 K+GS +KL+ Sbjct: 110 KMGSFKKLK 118>NP_001273721 Length = 1339 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KVGSVRKLR 9 K+GS +KL+ Sbjct: 172 KMGSFKKLK 180>NP_056042 Length = 424 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GSVRKLR 9 G+VRK+R Sbjct: 311 GAVRKIR 317>NP_598368 Length = 429 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GSVRKLR 9 G+VRK+R Sbjct: 311 GAVRKIR 317>XP_006724046 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GSVRKLR 9 G+VRK+R Sbjct: 186 GAVRKIR 192>XP_006724045 Length = 321 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GSVRKLR 9 G+VRK+R Sbjct: 203 GAVRKIR 209>XP_006724044 Length = 449 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GSVRKLR 9 G+VRK+R Sbjct: 331 GAVRKIR 337>XP_005271879 Length = 277 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VGSVRKLR 9 VGS+RK R Sbjct: 16 VGSLRKQR 23>XP_006716107 Length = 579 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KVGSVRK 7 K+GSVR+ Sbjct: 566 KIGSVRE 572>NP_443199 Length = 378 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 VGSVRKLR 9 VGS+RK R Sbjct: 317 VGSLRKKR 324Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.323 0.138 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 463,473 Number of extensions: 631 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |