Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_722576                                                              20     390
XP_005262424                                                           20     390
NP_001274275                                                           17    2528
NP_001130029                                                           17    2528
NP_001130030                                                           17    2528
NP_066011                                                              17    2528
NP_055685                                                              17    3301
NP_001077090                                                           17    3301
NP_006729                                                              16    5631
NP_001257475                                                           16    5631
NP_009131                                                              16    5631
NP_001073944                                                           16    5631
XP_006726646                                                           16    5631
XP_005254913                                                           16    5631
XP_005254912                                                           16    5631
XP_005254911                                                           16    5631
XP_005254910                                                           16    5631
XP_005254909                                                           16    5631
XP_005254908                                                           16    5631
XP_005254907                                                           16    5631
XP_005254906                                                           16    5631
XP_005254905                                                           16    5631
XP_005254904                                                           16    5631
XP_005254903                                                           16    5631
XP_005254902                                                           16    5631
XP_005254901                                                           16    5631
XP_005254900                                                           16    5631
XP_005254899                                                           16    5631
XP_005254898                                                           16    5631
XP_005254897                                                           16    5631
XP_006720441                                                           16    5631
XP_006720440                                                           16    5631
XP_006720439                                                           16    5631
XP_005254896                                                           16    5631
XP_005246602                                                           16    5631
XP_006712584                                                           16    5631
XP_005246601                                                           16    5631
XP_005246600                                                           16    5631
NP_001131136                                                           16    7355
NP_057322                                                              16    7355
XP_005253960                                                           16    7355
XP_006719513                                                           16    7355
NP_055467                                                              15    9605
NP_997464                                                              15    9605
XP_003846672                                                           15    9605
>NP_722576
          Length = 3080

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KTLLDETAT 9
           KTL+DETAT
Sbjct: 304 KTLVDETAT 312
>XP_005262424
          Length = 2875

 Score = 20.0 bits (40), Expect =   390
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KTLLDETAT 9
           KTL+DETAT
Sbjct: 99  KTLVDETAT 107
>NP_001274275
          Length = 332

 Score = 17.3 bits (33), Expect =  2528
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDETAT
Sbjct: 292 LLDETAT 298
>NP_001130029
          Length = 600

 Score = 17.3 bits (33), Expect =  2528
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDETAT
Sbjct: 529 LLDETAT 535
>NP_001130030
          Length = 571

 Score = 17.3 bits (33), Expect =  2528
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDETAT
Sbjct: 500 LLDETAT 506
>NP_066011
          Length = 552

 Score = 17.3 bits (33), Expect =  2528
 Identities = 7/7 (100%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDETAT
Sbjct: 481 LLDETAT 487
>NP_055685
          Length = 1239

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1  KTLLDETAT 9
          KTLLD T T
Sbjct: 50 KTLLDNTDT 58
>NP_001077090
          Length = 1239

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 7/9 (77%)

Query: 1  KTLLDETAT 9
          KTLLD T T
Sbjct: 50 KTLLDNTDT 58
>NP_006729
          Length = 2817

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1884 LVDETAT 1890
>NP_001257475
          Length = 1434

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 501 LVDETAT 507
>NP_009131
          Length = 2813

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1880 LVDETAT 1886
>NP_001073944
          Length = 761

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDET+T
Sbjct: 136 LLDETST 142
>XP_006726646
          Length = 453

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1  KTLLDETA 8
          KTLL+E+A
Sbjct: 19 KTLLEESA 26

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 1   KTLLDETA 8
           KTLL+E+A
Sbjct: 161 KTLLEESA 168
>XP_005254913
          Length = 1441

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 501 LVDETAT 507
>XP_005254912
          Length = 1442

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 502 LVDETAT 508
>XP_005254911
          Length = 1473

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 533 LVDETAT 539
>XP_005254910
          Length = 1523

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 583 LVDETAT 589
>XP_005254909
          Length = 1536

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 596 LVDETAT 602
>XP_005254908
          Length = 1536

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           L+DETAT
Sbjct: 596 LVDETAT 602
>XP_005254907
          Length = 2590

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1650 LVDETAT 1656
>XP_005254906
          Length = 2675

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1735 LVDETAT 1741
>XP_005254905
          Length = 2793

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1862 LVDETAT 1868
>XP_005254904
          Length = 2802

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1862 LVDETAT 1868
>XP_005254903
          Length = 2820

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1880 LVDETAT 1886
>XP_005254902
          Length = 2835

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1902 LVDETAT 1908
>XP_005254901
          Length = 2842

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1902 LVDETAT 1908
>XP_005254900
          Length = 2843

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1903 LVDETAT 1909
>XP_005254899
          Length = 2861

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1921 LVDETAT 1927
>XP_005254898
          Length = 2874

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1943 LVDETAT 1949
>XP_005254897
          Length = 2876

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1943 LVDETAT 1949
>XP_006720441
          Length = 2881

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1943 LVDETAT 1949
>XP_006720440
          Length = 2882

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1943 LVDETAT 1949
>XP_006720439
          Length = 2882

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1943 LVDETAT 1949
>XP_005254896
          Length = 2883

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3    LLDETAT 9
            L+DETAT
Sbjct: 1943 LVDETAT 1949
>XP_005246602
          Length = 651

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDET+T
Sbjct: 136 LLDETST 142
>XP_006712584
          Length = 657

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDET+T
Sbjct: 136 LLDETST 142
>XP_005246601
          Length = 761

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDET+T
Sbjct: 136 LLDETST 142
>XP_005246600
          Length = 761

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   LLDETAT 9
           LLDET+T
Sbjct: 136 LLDETST 142
>NP_001131136
          Length = 537

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   KTLLDETAT 9
           KTLLD+  T
Sbjct: 462 KTLLDKALT 470
>NP_057322
          Length = 599

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   KTLLDETAT 9
           KTLLD+  T
Sbjct: 462 KTLLDKALT 470
>XP_005253960
          Length = 378

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   KTLLDETAT 9
           KTLLD+  T
Sbjct: 241 KTLLDKALT 249
>XP_006719513
          Length = 552

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 1   KTLLDETAT 9
           KTLLD+  T
Sbjct: 415 KTLLDKALT 423
>NP_055467
          Length = 963

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KTLLDETA 8
           KTLLD+ A
Sbjct: 714 KTLLDDFA 721
>NP_997464
          Length = 320

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/8 (62%), Positives = 8/8 (100%)

Query: 1   KTLLDETA 8
           +TLLD++A
Sbjct: 279 RTLLDQSA 286
>XP_003846672
          Length = 830

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KTLLDETA 8
           KTLLD+ A
Sbjct: 714 KTLLDDFA 721
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.300    0.115    0.277 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 464,985
Number of extensions: 531
Number of successful extensions: 46
Number of sequences better than 10000.0: 45
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 46
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.2 bits)
S2: 28 (15.4 bits)

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