Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 20 509 XP_006718907 20 509 XP_006718906 20 509 XP_005271619 20 509 XP_005271618 20 509 NP_078966 16 5631 XP_006723004 16 5631 NP_005427 16 7355 NP_005319 15 9605 NP_001186209 15 9605 NP_005320 15 9605 NP_001094064 15 9605 NP_060189 15 9605 XP_005255978 15 9605 XP_005255977 15 9605 XP_005265303 15 9605 XP_005265302 15 9605>NP_000042 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KTLAVNFQI 9 KTLAVNF+I Sbjct: 241 KTLAVNFRI 249>XP_006718907 Length = 3050 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KTLAVNFQI 9 KTLAVNF+I Sbjct: 241 KTLAVNFRI 249>XP_006718906 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KTLAVNFQI 9 KTLAVNF+I Sbjct: 241 KTLAVNFRI 249>XP_005271619 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KTLAVNFQI 9 KTLAVNF+I Sbjct: 241 KTLAVNFRI 249>XP_005271618 Length = 3056 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KTLAVNFQI 9 KTLAVNF+I Sbjct: 241 KTLAVNFRI 249>NP_078966 Length = 14507 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KTLAVNFQI 9 KTL +NF I Sbjct: 14075 KTLTLNFTI 14083>XP_006723004 Length = 6443 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KTLAVNFQI 9 KTL +NF I Sbjct: 6011 KTLTLNFTI 6019>NP_005427 Length = 474 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KTLAVNFQ 8 +TLAVN++ Sbjct: 128 ETLAVNYE 135>NP_005319 Length = 552 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KTLAVNF 7 KT+ VNF Sbjct: 469 KTIVVNF 475>NP_001186209 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KTLAVNF 7 KT+ VNF Sbjct: 472 KTIVVNF 478>NP_005320 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KTLAVNF 7 KT+ VNF Sbjct: 472 KTIVVNF 478>NP_001094064 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KTLAVNFQ 8 KT++VN Q Sbjct: 738 KTISVNIQ 745>NP_060189 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KTLAVNFQ 8 KT++VN Q Sbjct: 738 KTISVNIQ 745>XP_005255978 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KTLAVNF 7 KT+ VNF Sbjct: 472 KTIVVNF 478>XP_005255977 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KTLAVNF 7 KT+ VNF Sbjct: 472 KTIVVNF 478>XP_005265303 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KTLAVNFQ 8 KT++VN Q Sbjct: 738 KTISVNIQ 745>XP_005265302 Length = 765 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KTLAVNFQ 8 KT++VN Q Sbjct: 738 KTISVNIQ 745Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.136 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 331,667 Number of extensions: 399 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |