Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 869 NP_671714 19 869 XP_006715890 19 869 XP_005250160 19 869 XP_005250159 19 869 NP_056993 17 3301 NP_055839 17 3301 NP_848622 16 7355 NP_001139 16 7355 XP_006714257 16 7355 XP_005263002 16 7355 XP_005262999 16 7355 XP_006714252 16 7355 XP_006714251 16 7355 XP_006714250 16 7355 XP_006711533 16 7355 XP_005245422 16 7355 NP_065821 16 7355 NP_001073950 15 9605 NP_665804 15 9605 NP_055309 15 9605 XP_006721103 15 9605 XP_005255314 15 9605 XP_006721102 15 9605 XP_005255313 15 9605 XP_005255312 15 9605 XP_006721101 15 9605 XP_005255311 15 9605 XP_005255310 15 9605 XP_005267232 15 9605 XP_005267230 15 9605 XP_005267229 15 9605 XP_005267228 15 9605 XP_005267227 15 9605 XP_005267226 15 9605>NP_005742 Length = 3907 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 K ESTTRLQ Sbjct: 2237 KKESTTRLQ 2245>NP_671714 Length = 3899 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 K ESTTRLQ Sbjct: 2229 KKESTTRLQ 2237>XP_006715890 Length = 3860 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 K ESTTRLQ Sbjct: 2190 KKESTTRLQ 2198>XP_005250160 Length = 3939 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 K ESTTRLQ Sbjct: 2269 KKESTTRLQ 2277>XP_005250159 Length = 3952 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 K ESTTRLQ Sbjct: 2282 KKESTTRLQ 2290>NP_056993 Length = 2371 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KTESTTRL 8 KTE+TT+L Sbjct: 1026 KTEATTKL 1033>NP_055839 Length = 1087 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TESTTRLQ 9 T++TTRLQ Sbjct: 22 TDTTTRLQ 29>NP_848622 Length = 1124 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 KTESTT 6 KTESTT Sbjct: 497 KTESTT 502>NP_001139 Length = 3957 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2266 KTETTTEIR 2274>XP_006714257 Length = 4145 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2275 KTETTTEIR 2283>XP_005263002 Length = 4072 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2233 KTETTTEIR 2241>XP_005262999 Length = 4147 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2277 KTETTTEIR 2285>XP_006714252 Length = 4153 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2283 KTETTTEIR 2291>XP_006714251 Length = 4165 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2295 KTETTTEIR 2303>XP_006714250 Length = 4190 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 KTE+TT ++ Sbjct: 2320 KTETTTEIR 2328>XP_006711533 Length = 747 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 KTE +RLQ Sbjct: 399 KTEECSRLQ 407>XP_005245422 Length = 1203 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 KTE +RLQ Sbjct: 399 KTEECSRLQ 407>NP_065821 Length = 1203 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 KTE +RLQ Sbjct: 399 KTEECSRLQ 407>NP_001073950 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 306 RTEETKRIQ 314>NP_665804 Length = 359 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KTESTTRLQ 9 +TE TTR++ Sbjct: 187 QTEKTTRVR 195>NP_055309 Length = 1962 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 676 TESTGRLE 683>XP_006721103 Length = 1597 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 644 TESTGRLE 651>XP_005255314 Length = 1709 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 423 TESTGRLE 430>XP_006721102 Length = 1820 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 534 TESTGRLE 541>XP_005255313 Length = 1822 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 644 TESTGRLE 651>XP_005255312 Length = 1871 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 644 TESTGRLE 651>XP_006721101 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 644 TESTGRLE 651>XP_005255311 Length = 1913 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 676 TESTGRLE 683>XP_005255310 Length = 1919 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TESTTRLQ 9 TEST RL+ Sbjct: 644 TESTGRLE 651>XP_005267232 Length = 437 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 306 RTEETKRIQ 314>XP_005267230 Length = 649 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 141 RTEETKRIQ 149>XP_005267229 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 306 RTEETKRIQ 314>XP_005267228 Length = 813 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 305 RTEETKRIQ 313>XP_005267227 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 306 RTEETKRIQ 314>XP_005267226 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KTESTTRLQ 9 +TE T R+Q Sbjct: 306 RTEETKRIQ 314Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.293 0.103 0.235 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 379,634 Number of extensions: 612 Number of successful extensions: 35 Number of sequences better than 10000.0: 35 Number of HSP's gapped: 35 Number of HSP's successfully gapped: 35 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.1 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |