Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 18 1935 NP_001243765 16 5631 NP_001243766 16 5631 NP_078914 16 5631 NP_001243764 16 5631 XP_005247827 16 5631 XP_006713807 16 5631 XP_005247826 16 5631 NP_689540 15 9605 XP_006720086 15 9605 XP_006720085 15 9605 XP_006720084 15 9605>NP_115927 Length = 1321 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSSVTAELA 9 KS VTAELA Sbjct: 846 KSPVTAELA 854>NP_001243765 Length = 309 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 131 SSVTAEL 137>NP_001243766 Length = 292 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 114 SSVTAEL 120>NP_078914 Length = 415 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 237 SSVTAEL 243>NP_001243764 Length = 427 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 249 SSVTAEL 255>XP_005247827 Length = 292 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 114 SSVTAEL 120>XP_006713807 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 151 SSVTAEL 157>XP_005247826 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 SSVTAEL 8 SSVTAEL Sbjct: 151 SSVTAEL 157>NP_689540 Length = 723 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSSVTAELA 9 KSS+ ELA Sbjct: 380 KSSIAKELA 388>XP_006720086 Length = 703 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSSVTAELA 9 KSS+ ELA Sbjct: 353 KSSIAKELA 361>XP_006720085 Length = 704 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSSVTAELA 9 KSS+ ELA Sbjct: 354 KSSIAKELA 362>XP_006720084 Length = 730 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSSVTAELA 9 KSS+ ELA Sbjct: 380 KSSIAKELA 388Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.287 0.0979 0.205 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 212,440 Number of extensions: 200 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (14.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |