Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 20 509 XP_006716142 20 509 XP_005250088 20 509 XP_006716141 20 509 XP_005250085 20 509 XP_006716140 20 509 XP_005250084 20 509 XP_005250083 20 509 XP_005250082 20 509 NP_003473 18 1135 NP_001340 18 1135 XP_006719679 18 1135 XP_005269219 18 1135 XP_006719678 18 1135 XP_006719677 18 1135 NP_001014990 17 3301 NP_054899 17 3301 NP_003096 16 5631 NP_001130 16 7355 NP_001136244 15 9605 NP_001136243 15 9605 NP_001153605 15 9605 NP_062816 15 9605 NP_001153606 15 9605 NP_001153602 15 9605 NP_001153604 15 9605 NP_008923 15 9605 NP_964013 15 9605 NP_001128689 15 9605>NP_733751 Length = 4911 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4770 KSNVYLARS 4778>XP_006716142 Length = 4927 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4786 KSNVYLARS 4794>XP_005250088 Length = 4928 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4787 KSNVYLARS 4795>XP_006716141 Length = 4959 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4818 KSNVYLARS 4826>XP_005250085 Length = 4979 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4838 KSNVYLARS 4846>XP_006716140 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4841 KSNVYLARS 4849>XP_005250084 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4841 KSNVYLARS 4849>XP_005250083 Length = 4982 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4841 KSNVYLARS 4849>XP_005250082 Length = 4983 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 KSNVYLA+S Sbjct: 4842 KSNVYLARS 4850>NP_003473 Length = 5537 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 K+NVYLA+S Sbjct: 5396 KNNVYLARS 5404>NP_001340 Length = 501 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KSNVYLAQS 9 K+N YLAQS Sbjct: 241 KNNAYLAQS 249>XP_006719679 Length = 5536 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 K+NVYLA+S Sbjct: 5395 KNNVYLARS 5403>XP_005269219 Length = 5537 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 K+NVYLA+S Sbjct: 5396 KNNVYLARS 5404>XP_006719678 Length = 5539 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 K+NVYLA+S Sbjct: 5398 KNNVYLARS 5406>XP_006719677 Length = 5540 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 K+NVYLA+S Sbjct: 5399 KNNVYLARS 5407>NP_001014990 Length = 126 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 +SN+Y+A+S Sbjct: 51 RSNLYIAES 59>NP_054899 Length = 206 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSNVYLAQS 9 +SN+Y+A+S Sbjct: 131 RSNLYIAES 139>NP_003096 Length = 2214 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KSNVYLAQS 9 K+NVY++ S Sbjct: 517 KTNVYISSS 525>NP_001130 Length = 701 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KSNVYLA 7 K N+YLA Sbjct: 310 KGNIYLA 316>NP_001136244 Length = 1677 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 NVYLAQS 9 N+Y+AQ+ Sbjct: 1539 NIYIAQN 1545>NP_001136243 Length = 1682 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 7/7 (100%) Query: 3 NVYLAQS 9 N+Y+AQ+ Sbjct: 1544 NIYIAQN 1550>NP_001153605 Length = 951 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSNVYLAQS 9 K NV +AQS Sbjct: 807 KENVQVAQS 815>NP_062816 Length = 932 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSNVYLAQS 9 K NV +AQS Sbjct: 788 KENVQVAQS 796>NP_001153606 Length = 822 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSNVYLAQS 9 K NV +AQS Sbjct: 678 KENVQVAQS 686>NP_001153602 Length = 923 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSNVYLAQS 9 K NV +AQS Sbjct: 779 KENVQVAQS 787>NP_001153604 Length = 942 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSNVYLAQS 9 K NV +AQS Sbjct: 798 KENVQVAQS 806>NP_008923 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVYLAQS 9 N+YLAQ+ Sbjct: 204 NLYLAQN 210>NP_964013 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVYLAQS 9 N+YLAQ+ Sbjct: 204 NLYLAQN 210>NP_001128689 Length = 343 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 NVYLAQS 9 N+YLAQ+ Sbjct: 204 NLYLAQN 210Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.301 0.111 0.267 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 380,258 Number of extensions: 412 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |