Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 18 1135 NP_001087241 18 1135 XP_005265799 18 1135 XP_005265798 18 1135 XP_005265797 18 1135>NP_000213 Length = 976 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNAAMTVA 9 KS+AAMTVA Sbjct: 613 KSDAAMTVA 621>NP_001087241 Length = 972 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNAAMTVA 9 KS+AAMTVA Sbjct: 609 KSDAAMTVA 617>XP_005265799 Length = 973 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNAAMTVA 9 KS+AAMTVA Sbjct: 610 KSDAAMTVA 618>XP_005265798 Length = 976 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNAAMTVA 9 KS+AAMTVA Sbjct: 614 KSDAAMTVA 622>XP_005265797 Length = 977 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KSNAAMTVA 9 KS+AAMTVA Sbjct: 614 KSDAAMTVA 622Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.299 0.0969 0.218 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 203,817 Number of extensions: 175 Number of successful extensions: 5 Number of sequences better than 10000.0: 5 Number of HSP's gapped: 5 Number of HSP's successfully gapped: 5 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |