Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115927 17 3301 NP_001071643 17 4312 NP_001071644 17 4312 NP_001071645 17 4312 NP_001071642 17 4312 NP_004946 17 4312 NP_001073005 17 4312 NP_078942 17 4312 XP_006720746 17 4312 XP_005254721 17 4312 XP_005248939 17 4312 XP_005248938 17 4312 XP_005248936 17 4312 XP_005248937 17 4312 XP_005248935 17 4312 XP_005248933 17 4312 XP_005248932 17 4312 NP_803235 17 4312 NP_004645 16 5631 NP_001034680 16 5631 NP_001034679 16 5631 NP_570969 16 5631 XP_005272733 16 5631 XP_005272732 16 5631 NP_055887 16 7355>NP_115927 Length = 1321 Score = 16.9 bits (32), Expect = 3301 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLVTAELA 9 KS VTAELA Sbjct: 846 KSPVTAELA 854>NP_001071643 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>NP_001071644 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>NP_001071645 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>NP_001071642 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>NP_004946 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>NP_001073005 Length = 158 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KSLVTAELA 9 KS+VTAE++ Sbjct: 136 KSIVTAEVS 144>NP_078942 Length = 315 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KSLVTAELA 9 K LVTAE+A Sbjct: 66 KFLVTAEIA 74>XP_006720746 Length = 194 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KSLVTAELA 9 K LVTAE+A Sbjct: 66 KFLVTAEIA 74>XP_005254721 Length = 206 Score = 16.5 bits (31), Expect = 4312 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KSLVTAELA 9 K LVTAE+A Sbjct: 66 KFLVTAEIA 74>XP_005248939 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>XP_005248938 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>XP_005248936 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>XP_005248937 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>XP_005248935 Length = 456 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 50 SLVTAELS 57>XP_005248933 Length = 499 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 93 SLVTAELS 100>XP_005248932 Length = 535 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 8/8 (100%) Query: 2 SLVTAELA 9 SLVTAEL+ Sbjct: 129 SLVTAELS 136>NP_803235 Length = 130 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KSLVTAELA 9 KS+VTAE++ Sbjct: 108 KSIVTAEVS 116>NP_004645 Length = 2555 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KSLVTAEL 8 KSL+TA+L Sbjct: 959 KSLITAKL 966>NP_001034680 Length = 2554 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KSLVTAEL 8 KSL+TA+L Sbjct: 958 KSLITAKL 965>NP_001034679 Length = 2570 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KSLVTAEL 8 KSL+TA+L Sbjct: 958 KSLITAKL 965>NP_570969 Length = 605 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KSLVTAEL 8 KSLV AEL Sbjct: 199 KSLVAAEL 206>XP_005272733 Length = 2559 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KSLVTAEL 8 KSL+TA+L Sbjct: 963 KSLITAKL 970>XP_005272732 Length = 2575 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KSLVTAEL 8 KSL+TA+L Sbjct: 963 KSLITAKL 970>NP_055887 Length = 1281 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KSLVTAEL 8 +S+VTAEL Sbjct: 1026 QSMVTAEL 1033Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.114 0.249 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 227,919 Number of extensions: 206 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |