Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 4312 XP_006716142 17 4312 XP_005250088 17 4312 XP_006716141 17 4312 XP_005250085 17 4312 XP_006716140 17 4312 XP_005250084 17 4312 XP_005250083 17 4312 XP_005250082 17 4312 XP_005253689 16 5631 XP_006719761 16 5631 NP_001177900 16 5631 NP_004755 16 5631 NP_001071087 16 7355 XP_005251222 16 7355 NP_689644 16 7355 NP_062815 15 9605>NP_733751 Length = 4911 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 913 KSGIGAVVL 921>XP_006716142 Length = 4927 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_005250088 Length = 4928 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_006716141 Length = 4959 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_005250085 Length = 4979 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_006716140 Length = 4982 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_005250084 Length = 4982 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_005250083 Length = 4982 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 913 KSGIGAVVL 921>XP_005250082 Length = 4983 Score = 16.5 bits (31), Expect = 4312 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS IGAVVL Sbjct: 914 KSGIGAVVL 922>XP_005253689 Length = 861 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KSLIGAVVL 9 K LIG VVL Sbjct: 301 KELIGLVVL 309>XP_006719761 Length = 861 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KSLIGAVVL 9 K LIG VVL Sbjct: 301 KELIGLVVL 309>NP_001177900 Length = 829 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KSLIGAVVL 9 K LIG VVL Sbjct: 301 KELIGLVVL 309>NP_004755 Length = 861 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KSLIGAVVL 9 K LIG VVL Sbjct: 301 KELIGLVVL 309>NP_001071087 Length = 331 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS++ AVVL Sbjct: 241 KSILNAVVL 249>XP_005251222 Length = 285 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSLIGAVVL 9 KS++ AVVL Sbjct: 195 KSILNAVVL 203>NP_689644 Length = 852 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSLIGAVVL 9 K LIG +VL Sbjct: 295 KQLIGLIVL 303>NP_062815 Length = 729 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 SLIGAVVL 9 S++GAV++ Sbjct: 392 SIVGAVII 399Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.325 0.144 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 317,157 Number of extensions: 464 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |