Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_733751 17 2528 XP_006716142 17 2528 XP_005250088 17 2528 XP_006716141 17 2528 XP_005250085 17 2528 XP_006716140 17 2528 XP_005250084 17 2528 XP_005250083 17 2528 XP_005250082 17 2528 NP_005616 16 5631 NP_001007071 16 5631 NP_001007068 16 5631 NP_001007069 16 5631 NP_001007070 16 5631 XP_005256599 16 5631 XP_005251337 16 5631 NP_001135976 16 7355 NP_002660 16 7355 NP_001188493 16 7355 NP_001135975 16 7355 NP_775835 16 7355 NP_055540 16 7355 NP_002310 16 7355 NP_001276863 16 7355 XP_005262372 16 7355 XP_005262371 16 7355 XP_005250403 16 7355 XP_005250285 16 7355 XP_006715971 16 7355 XP_006715970 16 7355 NP_821075 15 9605 NP_443083 15 9605 NP_821074 15 9605 NP_001230405 15 9605 NP_004163 15 9605 NP_004161 15 9605 NP_001160167 15 9605 NP_001276868 15 9605 NP_001276869 15 9605 NP_001136438 15 9605 NP_277039 15 9605 NP_071903 15 9605 XP_006722610 15 9605 XP_006719952 15 9605 XP_006719951 15 9605 XP_005266643 15 9605 XP_005249615 15 9605 XP_005249612 15 9605 XP_006714551 15 9605 XP_005248399 15 9605 XP_005270465 15 9605>NP_733751 Length = 4911 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 913 KSGIGAVVL 921>XP_006716142 Length = 4927 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>XP_005250088 Length = 4928 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>XP_006716141 Length = 4959 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>XP_005250085 Length = 4979 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>XP_006716140 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>XP_005250084 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>XP_005250083 Length = 4982 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 913 KSGIGAVVL 921>XP_005250082 Length = 4983 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 KSGI AVVL Sbjct: 914 KSGIGAVVL 922>NP_005616 Length = 298 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIR V+L Sbjct: 109 KQGIREVIL 117>NP_001007071 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIR V+L Sbjct: 108 KQGIREVIL 116>NP_001007068 Length = 298 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIR V+L Sbjct: 109 KQGIREVIL 117>NP_001007069 Length = 292 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIR V+L Sbjct: 103 KQGIREVIL 111>NP_001007070 Length = 297 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIR V+L Sbjct: 108 KQGIREVIL 116>XP_005256599 Length = 739 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KSGIRAVVL 9 K+GIRA V+ Sbjct: 12 KAGIRAAVV 20>XP_005251337 Length = 318 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIR V+L Sbjct: 129 KQGIREVIL 137>NP_001135976 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSGIRAVVL 9 +SG+RA++L Sbjct: 952 ESGVRALML 960>NP_002660 Length = 514 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K +RAVVL Sbjct: 372 KKSVRAVVL 380>NP_001188493 Length = 505 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K +RAVVL Sbjct: 363 KKSVRAVVL 371>NP_001135975 Length = 1103 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSGIRAVVL 9 +SG+RA++L Sbjct: 1032 ESGVRALML 1040>NP_775835 Length = 841 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SG+R VVL Sbjct: 734 SGVRQVVL 741>NP_055540 Length = 1023 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSGIRAVVL 9 +SG+RA++L Sbjct: 952 ESGVRALML 960>NP_002310 Length = 683 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 435 KPGLRAVV 442>NP_001276863 Length = 652 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 435 KPGLRAVV 442>XP_005262372 Length = 1027 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSGIRAVVL 9 +SG+RA++L Sbjct: 956 ESGVRALML 964>XP_005262371 Length = 1107 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KSGIRAVVL 9 +SG+RA++L Sbjct: 1036 ESGVRALML 1044>XP_005250403 Length = 644 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 396 KPGLRAVV 403>XP_005250285 Length = 842 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SG+R VVL Sbjct: 735 SGVRQVVL 742>XP_006715971 Length = 842 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SG+R VVL Sbjct: 735 SGVRQVVL 742>XP_006715970 Length = 842 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SG+R VVL Sbjct: 735 SGVRQVVL 742>NP_821075 Length = 1105 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 1036 GVRAVVM 1042>NP_443083 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 926 GVRAVVM 932>NP_821074 Length = 1113 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 1044 GVRAVVM 1050>NP_001230405 Length = 1078 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 1009 GVRAVVM 1015>NP_004163 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 118 KMGMRAVV 125>NP_004161 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 89 KIGLRAVV 96>NP_001160167 Length = 497 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 118 KMGMRAVV 125>NP_001276868 Length = 496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 72 KMGMRAVV 79>NP_001276869 Length = 430 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 118 KMGMRAVV 125>NP_001136438 Length = 1923 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SG+R V+L Sbjct: 394 SGVRPVIL 401>NP_277039 Length = 222 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SGI A+VL Sbjct: 74 SGIAAIVL 81>NP_071903 Length = 490 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIRA +L Sbjct: 140 KKGIRARIL 148>XP_006722610 Length = 1967 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SG+R V+L Sbjct: 437 SGVRPVIL 444>XP_006719952 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 926 GVRAVVM 932>XP_006719951 Length = 995 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 926 GVRAVVM 932>XP_005266643 Length = 1098 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 GIRAVVL 9 G+RAVV+ Sbjct: 1029 GVRAVVM 1035>XP_005249615 Length = 304 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIRA +L Sbjct: 140 KKGIRARIL 148>XP_005249612 Length = 436 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KSGIRAVVL 9 K GIRA +L Sbjct: 140 KKGIRARIL 148>XP_006714551 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 118 KMGMRAVV 125>XP_005248399 Length = 542 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KSGIRAVV 8 K G+RAVV Sbjct: 118 KMGMRAVV 125>XP_005270465 Length = 240 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 SGIRAVVL 9 SGI A+VL Sbjct: 74 SGIAAIVL 81Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.326 0.141 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 364,450 Number of extensions: 500 Number of successful extensions: 51 Number of sequences better than 10000.0: 51 Number of HSP's gapped: 51 Number of HSP's successfully gapped: 51 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |