Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 20 390 XP_005262424 20 390 NP_056150 17 3301 XP_006719370 17 3301 XP_006719369 17 3301 XP_006719368 17 3301 NP_001034230 17 4312 NP_036336 17 4312 NP_000324 16 5631 NP_057532 16 5631 NP_060762 16 5631 NP_001273158 16 5631 NP_001273159 16 5631 NP_001273494 16 5631 NP_001273495 16 5631 NP_055547 16 5631 NP_001121621 16 5631 NP_001170858 16 5631 NP_001182408 16 5631 NP_006061 16 5631 NP_001007566 16 5631 NP_001182407 16 5631 XP_005256324 16 5631 XP_005256322 16 5631 XP_005247123 16 5631 XP_006713536 16 5631 XP_006713535 16 5631 NP_001180270 16 7355 NP_079355 16 7355 NP_689945 16 7355 NP_001273720 16 7355 NP_079363 16 7355 XP_005248958 16 7355 XP_006714093 16 7355 XP_005248183 16 7355 XP_006710988 16 7355 XP_005271284 16 7355 XP_005271283 16 7355 NP_001035987 15 9605 NP_008944 15 9605 NP_055585 15 9605 NP_001116244 15 9605 NP_037534 15 9605 XP_006723282 15 9605 XP_005268683 15 9605 XP_005268682 15 9605 XP_005250818 15 9605 XP_005250817 15 9605>NP_722576 Length = 3080 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSAFGPTKN 9 KSA GPTKN Sbjct: 1775 KSASGPTKN 1783>XP_005262424 Length = 2875 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KSAFGPTKN 9 KSA GPTKN Sbjct: 1570 KSASGPTKN 1578>NP_056150 Length = 2210 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF PT N Sbjct: 1560 SAFNPTSN 1567>XP_006719370 Length = 2076 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF PT N Sbjct: 1426 SAFNPTSN 1433>XP_006719369 Length = 2200 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF PT N Sbjct: 1550 SAFNPTSN 1557>XP_006719368 Length = 2209 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF PT N Sbjct: 1559 SAFNPTSN 1566>NP_001034230 Length = 2365 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KSAFGPTK 8 +S+FGPT+ Sbjct: 962 QSSFGPTQ 969>NP_036336 Length = 822 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 SAFGPTK 8 SAFGP K Sbjct: 335 SAFGPIK 341>NP_000324 Length = 892 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KSAFGPT 7 KSA GPT Sbjct: 271 KSAVGPT 277>NP_057532 Length = 730 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KSAFGPTKN 9 K + GPTK+ Sbjct: 600 KDSLGPTKS 608>NP_060762 Length = 528 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 135 FGPVKN 140>NP_001273158 Length = 459 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KSAFGPTKN 9 K + GPTK+ Sbjct: 329 KDSLGPTKS 337>NP_001273159 Length = 688 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KSAFGPTKN 9 K + GPTK+ Sbjct: 558 KDSLGPTKS 566>NP_001273494 Length = 411 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 175 FGPAKN 180>NP_001273495 Length = 401 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 175 FGPAKN 180>NP_055547 Length = 411 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 175 FGPAKN 180>NP_001121621 Length = 747 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KSAFGPT 7 KSA GPT Sbjct: 126 KSAVGPT 132>NP_001170858 Length = 945 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KSAFGPT 7 KSA GPT Sbjct: 271 KSAVGPT 277>NP_001182408 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>NP_006061 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>NP_001007566 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>NP_001182407 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>XP_005256324 Length = 301 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 175 FGPAKN 180>XP_005256322 Length = 411 Score = 16.2 bits (30), Expect = 5631 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 175 FGPAKN 180>XP_005247123 Length = 396 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>XP_006713536 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>XP_006713535 Length = 400 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 SAF P KN Sbjct: 166 SAFDPLKN 173>NP_001180270 Length = 306 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KSAFGPT 7 K+ FGPT Sbjct: 146 KTPFGPT 152>NP_079355 Length = 599 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 S+FGPT Sbjct: 413 SSFGPT 418>NP_689945 Length = 276 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KSAFGPT 7 K+ FGPT Sbjct: 161 KTPFGPT 167>NP_001273720 Length = 672 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 339 FGPKKN 344>NP_079363 Length = 699 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 366 FGPKKN 371>XP_005248958 Length = 321 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 1 KSAFGPT 7 K+ FGPT Sbjct: 161 KTPFGPT 167>XP_006714093 Length = 511 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 178 FGPKKN 183>XP_005248183 Length = 613 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 4 FGPTKN 9 FGP KN Sbjct: 280 FGPKKN 285>XP_006710988 Length = 422 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 S+FGPT Sbjct: 236 SSFGPT 241>XP_005271284 Length = 480 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 S+FGPT Sbjct: 294 SSFGPT 299>XP_005271283 Length = 599 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 S+FGPT Sbjct: 413 SSFGPT 418>NP_001035987 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 2 SAFGPT 7 S FGPT Sbjct: 173 SGFGPT 178>NP_008944 Length = 922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 S+F PT N Sbjct: 247 SSFAPTDN 254>NP_055585 Length = 836 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 SAFGP+ Sbjct: 409 SAFGPS 414>NP_001116244 Length = 1192 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 SAFGP+ Sbjct: 745 SAFGPS 750>NP_037534 Length = 501 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 AFGPTKN 9 +F PTKN Sbjct: 156 SFEPTKN 162>XP_006723282 Length = 410 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 5/6 (83%) Query: 2 SAFGPT 7 S FGPT Sbjct: 173 SGFGPT 178>XP_005268683 Length = 856 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 SAFGP+ Sbjct: 409 SAFGPS 414>XP_005268682 Length = 1172 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 SAFGPT 7 SAFGP+ Sbjct: 745 SAFGPS 750>XP_005250818 Length = 921 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 S+F PT N Sbjct: 246 SSFAPTDN 253>XP_005250817 Length = 922 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 2 SAFGPTKN 9 S+F PT N Sbjct: 247 SSFAPTDN 254Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.304 0.122 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 844,499 Number of extensions: 994 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |