Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001155973 18 1135 NP_001020014 18 1135 NP_055903 18 1135 NP_001171661 17 3301 NP_004245 17 3301 NP_001171665 17 3301 NP_001171662 17 3301 NP_036443 17 3301 XP_006717498 17 3301 XP_006717497 17 3301 NP_116239 17 4312 NP_001245350 17 4312 NP_001070736 17 4312 NP_001120670 16 5631 NP_009198 16 5631 NP_060895 16 5631 XP_005257055 16 5631 XP_005257053 16 5631 XP_005257052 16 5631 NP_005903 16 7355 NP_002042 16 7355 NP_001002295 16 7355 NP_001092909 16 7355 NP_443124 16 7355 NP_006460 16 7355 NP_071332 16 7355 XP_005252500 16 7355 XP_005252499 16 7355 XP_005244900 16 7355 NP_003202 16 7355 NP_006840 16 7355 NP_001070248 16 7355 NP_001263256 15 9605 NP_001263255 15 9605 NP_700357 15 9605 NP_653186 15 9605 NP_001264044 15 9605 NP_001252542 15 9605 NP_001010985 15 9605 XP_006718494 15 9605 XP_005273799 15 9605 XP_006718493 15 9605 XP_005250558 15 9605 XP_006710676 15 9605>NP_001155973 Length = 1833 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 KRVAV NGQ Sbjct: 71 KRVAVPNGQ 79>NP_001020014 Length = 1029 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 KRVAV NGQ Sbjct: 107 KRVAVPNGQ 115>NP_055903 Length = 1723 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 KRVAV NGQ Sbjct: 71 KRVAVPNGQ 79>NP_001171661 Length = 542 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RVAV NG+ Sbjct: 277 RRVAVFNGK 285>NP_004245 Length = 542 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RVAV NG+ Sbjct: 277 RRVAVFNGK 285>NP_001171665 Length = 419 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RVAV NG+ Sbjct: 154 RRVAVFNGK 162>NP_001171662 Length = 451 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RVAV NG+ Sbjct: 186 RRVAVFNGK 194>NP_036443 Length = 393 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KRVAVLNG 8 KR+ VLNG Sbjct: 341 KRILVLNG 348>XP_006717498 Length = 288 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KRVAVLNG 8 KR+ VLNG Sbjct: 235 KRILVLNG 242>XP_006717497 Length = 394 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KRVAVLNG 8 KR+ VLNG Sbjct: 341 KRILVLNG 348>NP_116239 Length = 461 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 KR+A+L GQ Sbjct: 321 KRLAMLRGQ 329>NP_001245350 Length = 296 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 KR+A+L GQ Sbjct: 156 KRLAMLRGQ 164>NP_001070736 Length = 471 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 KR+A+L GQ Sbjct: 331 KRLAMLRGQ 339>NP_001120670 Length = 805 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRVAVLNGQ 9 +RV VL GQ Sbjct: 531 RRVGVLQGQ 539>NP_009198 Length = 805 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRVAVLNGQ 9 +RV VL GQ Sbjct: 531 RRVGVLQGQ 539>NP_060895 Length = 479 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 K++AV+ GQ Sbjct: 418 KQIAVMRGQ 426>XP_005257055 Length = 578 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRVAVLNGQ 9 +RV VL GQ Sbjct: 304 RRVGVLQGQ 312>XP_005257053 Length = 805 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRVAVLNGQ 9 +RV VL GQ Sbjct: 531 RRVGVLQGQ 539>XP_005257052 Length = 805 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRVAVLNGQ 9 +RV VL GQ Sbjct: 531 RRVGVLQGQ 539>NP_005903 Length = 332 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KRVAVLNG 8 KR+AVL G Sbjct: 224 KRIAVLPG 231>NP_002042 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AVLNGQ 9 AVLNGQ Sbjct: 17 AVLNGQ 22>NP_001002295 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AVLNGQ 9 AVLNGQ Sbjct: 17 AVLNGQ 22>NP_001092909 Length = 1008 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 RVAVLNG 8 RVA LNG Sbjct: 424 RVAALNG 430>NP_443124 Length = 2459 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 R+AVL GQ Sbjct: 636 RLAVLRGQ 643>NP_006460 Length = 642 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VAVLNGQ 9 VAVLNG+ Sbjct: 554 VAVLNGK 560>NP_071332 Length = 384 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KRVAVLN 7 KRV+VLN Sbjct: 224 KRVSVLN 230>XP_005252500 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AVLNGQ 9 AVLNGQ Sbjct: 17 AVLNGQ 22>XP_005252499 Length = 444 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AVLNGQ 9 AVLNGQ Sbjct: 17 AVLNGQ 22>XP_005244900 Length = 424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VAVLNGQ 9 VAVLNG+ Sbjct: 336 VAVLNGK 342>NP_003202 Length = 410 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 R+AV NG+ Sbjct: 225 RIAVFNGK 232>NP_006840 Length = 525 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 AVLNGQ 9 AVLNGQ Sbjct: 366 AVLNGQ 371>NP_001070248 Length = 991 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 R+AVL GQ Sbjct: 636 RLAVLRGQ 643>NP_001263256 Length = 445 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 193 RVAAINGK 200>NP_001263255 Length = 519 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 267 RVAAINGK 274>NP_700357 Length = 332 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 80 RVAAINGK 87>NP_653186 Length = 553 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 301 RVAAINGK 308>NP_001264044 Length = 4516 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 AVLNGQ 9 A+LNGQ Sbjct: 498 AILNGQ 503>NP_001252542 Length = 331 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RV+V NG+ Sbjct: 97 RRVSVRNGE 105>NP_001010985 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RV+V NG+ Sbjct: 97 RRVSVRNGE 105>XP_006718494 Length = 543 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 291 RVAAINGK 298>XP_005273799 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 326 RVAAINGK 333>XP_006718493 Length = 578 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 RVAVLNGQ 9 RVA +NG+ Sbjct: 326 RVAAINGK 333>XP_005250558 Length = 1024 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 RVAVLNGQ 9 RVA++NG+ Sbjct: 485 RVALVNGK 492>XP_006710676 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRVAVLNGQ 9 +RV+V NG+ Sbjct: 97 RRVSVRNGE 105Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.318 0.133 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 440,526 Number of extensions: 716 Number of successful extensions: 44 Number of sequences better than 10000.0: 44 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 44 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |