Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 20 390 NP_065928 18 1935 XP_005256527 18 1935 NP_000284 17 4312 NP_689753 17 4312 XP_005256040 17 4312 NP_000072 16 5631 NP_001166137 16 5631 NP_001166136 16 5631 NP_001166135 16 5631 NP_066991 16 5631 NP_001166134 16 5631 XP_006722488 16 5631 XP_006722487 16 5631 XP_006722486 16 5631 XP_006722485 16 5631 XP_005266720 16 5631 XP_006722484 16 5631 XP_005266717 16 5631 XP_005266715 16 5631 XP_005273087 16 5631 XP_006711794 16 5631 XP_005273086 16 5631 XP_005273085 16 5631 XP_005273084 16 5631 NP_004817 16 7355 NP_001277716 16 7355 NP_073572 15 9605 NP_055625 15 9605 NP_001073890 15 9605 XP_006722755 15 9605 XP_006711734 15 9605 XP_006711733 15 9605 XP_006711732 15 9605 XP_006711731 15 9605 XP_006711730 15 9605 XP_006711729 15 9605 XP_005245695 15 9605>NP_002430 Length = 1137 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRSKSIY P Sbjct: 223 KRSKSIYTP 231>NP_065928 Length = 4427 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+K +Y+P Sbjct: 2464 KRTKGVYVP 2472>XP_005256527 Length = 4427 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+K +Y+P Sbjct: 2464 KRTKGVYVP 2472>NP_000284 Length = 1093 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRS S+Y P Sbjct: 23 KRSGSVYEP 31>NP_689753 Length = 684 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 K+ KS+Y+P Sbjct: 555 KQFKSVYVP 563>XP_005256040 Length = 1093 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRS S+Y P Sbjct: 23 KRSGSVYEP 31>NP_000072 Length = 3801 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+KS+ +P Sbjct: 1499 KRNKSLILP 1507>NP_001166137 Length = 262 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRSKSI P Sbjct: 239 KRSKSIRPP 247>NP_001166136 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRSKSI P Sbjct: 258 KRSKSIRPP 266>NP_001166135 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRSKSI P Sbjct: 258 KRSKSIRPP 266>NP_066991 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRSKSI P Sbjct: 258 KRSKSIRPP 266>NP_001166134 Length = 281 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 KRSKSI P Sbjct: 258 KRSKSIRPP 266>XP_006722488 Length = 1084 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_006722487 Length = 1102 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_006722486 Length = 1150 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_006722485 Length = 1168 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_005266720 Length = 1234 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_006722484 Length = 1252 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_005266717 Length = 1254 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_005266715 Length = 1272 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KRS S+++P Sbjct: 67 KRSSSMFIP 75>XP_005273087 Length = 2788 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+KS+ +P Sbjct: 1499 KRNKSLILP 1507>XP_006711794 Length = 3022 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+KS+ +P Sbjct: 720 KRNKSLILP 728>XP_005273086 Length = 3264 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+KS+ +P Sbjct: 1499 KRNKSLILP 1507>XP_005273085 Length = 3755 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+KS+ +P Sbjct: 1499 KRNKSLILP 1507>XP_005273084 Length = 3801 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KRSKSIYMP 9 KR+KS+ +P Sbjct: 1499 KRNKSLILP 1507>NP_004817 Length = 775 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KRSKSIYM 8 +RS+SIY+ Sbjct: 723 RRSQSIYL 730>NP_001277716 Length = 773 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KRSKSIYM 8 +RS+SIY+ Sbjct: 721 RRSQSIYL 728>NP_073572 Length = 528 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 RSKSIY 7 RSKS+Y Sbjct: 516 RSKSVY 521>NP_055625 Length = 3117 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1276 ERSKSSVMP 1284>NP_001073890 Length = 1703 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KRSKSIY 7 KR+K+IY Sbjct: 710 KRTKTIY 716>XP_006722755 Length = 1722 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KRSKSIY 7 KR+K+IY Sbjct: 710 KRTKTIY 716>XP_006711734 Length = 3136 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1254 ERSKSSVMP 1262>XP_006711733 Length = 3137 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1255 ERSKSSVMP 1263>XP_006711732 Length = 3154 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1272 ERSKSSVMP 1280>XP_006711731 Length = 3157 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1275 ERSKSSVMP 1283>XP_006711730 Length = 3157 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1275 ERSKSSVMP 1283>XP_006711729 Length = 3158 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1276 ERSKSSVMP 1284>XP_005245695 Length = 3158 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KRSKSIYMP 9 +RSKS MP Sbjct: 1276 ERSKSSVMP 1284Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.126 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 426,164 Number of extensions: 684 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |