Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005036 17 4312 NP_774959 17 4312 NP_001254711 16 7355 NP_001254712 16 7355 NP_060219 16 7355 XP_006718323 16 7355 XP_005253071 16 7355 XP_005253069 16 7355 XP_005253068 16 7355 XP_006718322 16 7355 XP_005253066 16 7355 NP_059138 15 9605 NP_056262 15 9605 NP_001034 15 9605 NP_001165972 15 9605 NP_001165973 15 9605 NP_001137505 15 9605 NP_001165975 15 9605 XP_006721326 15 9605 XP_005266331 15 9605 XP_005263454 15 9605 XP_005263453 15 9605 NP_660329 15 9605>NP_005036 Length = 3460 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RATFLLAL 9 R TFLLAL Sbjct: 8 RQTFLLAL 15>NP_774959 Length = 3458 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 RATFLLAL 9 R TFLLAL Sbjct: 8 RQTFLLAL 15>NP_001254711 Length = 1301 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>NP_001254712 Length = 1179 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>NP_060219 Length = 1208 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>XP_006718323 Length = 1119 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>XP_005253071 Length = 1208 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>XP_005253069 Length = 1238 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>XP_005253068 Length = 1269 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>XP_006718322 Length = 1298 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>XP_005253066 Length = 1298 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 R+TFLLA Sbjct: 54 RSTFLLA 60>NP_059138 Length = 1032 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 RA+FLLA Sbjct: 948 RASFLLA 954>NP_056262 Length = 1602 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KRATFLL 7 KRA FLL Sbjct: 1286 KRAAFLL 1292>NP_001034 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ATFLLAL 9 +TFLLAL Sbjct: 452 STFLLAL 458>NP_001165972 Length = 617 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ATFLLAL 9 +TFLLAL Sbjct: 452 STFLLAL 458>NP_001165973 Length = 512 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ATFLLAL 9 +TFLLAL Sbjct: 347 STFLLAL 353>NP_001137505 Length = 282 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 +ATFLLA Sbjct: 129 QATFLLA 135>NP_001165975 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ATFLLAL 9 +TFLLAL Sbjct: 452 STFLLAL 458>XP_006721326 Length = 628 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 ATFLLAL 9 +TFLLAL Sbjct: 452 STFLLAL 458>XP_005266331 Length = 241 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 +ATFLLA Sbjct: 88 QATFLLA 94>XP_005263454 Length = 1324 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KRATFLL 7 KRA FLL Sbjct: 1008 KRAAFLL 1014>XP_005263453 Length = 1613 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KRATFLL 7 KRA FLL Sbjct: 1297 KRAAFLL 1303>NP_660329 Length = 291 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 RATFLLA 8 +ATFLLA Sbjct: 138 QATFLLA 144Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.343 0.146 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 294,521 Number of extensions: 261 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |