Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000213 18 1482 NP_001087241 18 1482 XP_005265799 18 1482 XP_005265798 18 1482 XP_005265797 18 1482 NP_060839 17 3301 NP_001138680 17 3301 NP_001160022 17 4312 NP_000193 17 4312 NP_006114 17 4312 NP_003817 16 5631 NP_001002912 15 9605 NP_002968 15 9605 NP_003038 15 9605 NP_005779 15 9605 NP_001138639 15 9605 NP_001138638 15 9605 XP_006718184 15 9605 XP_005252787 15 9605 XP_005246814 15 9605 XP_005270507 15 9605 XP_006710414 15 9605 XP_006710413 15 9605 XP_006710412 15 9605 XP_006710411 15 9605>NP_000213 Length = 976 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ VQLIEK Sbjct: 918 KQIVQLIEK 926>NP_001087241 Length = 972 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ VQLIEK Sbjct: 914 KQIVQLIEK 922>XP_005265799 Length = 973 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ VQLIEK Sbjct: 915 KQIVQLIEK 923>XP_005265798 Length = 976 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ VQLIEK Sbjct: 918 KQIVQLIEK 926>XP_005265797 Length = 977 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ VQLIEK Sbjct: 919 KQIVQLIEK 927>NP_060839 Length = 529 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KQSVQLIEK 9 KQ+VQL++K Sbjct: 70 KQTVQLLKK 78>NP_001138680 Length = 467 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KQSVQLIEK 9 KQ+VQL++K Sbjct: 70 KQTVQLLKK 78>NP_001160022 Length = 460 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSVQLIEK 9 +Q++QL+EK Sbjct: 113 EQAIQLLEK 121>NP_000193 Length = 550 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSVQLIEK 9 +Q++QL+EK Sbjct: 203 EQAIQLLEK 211>NP_006114 Length = 343 Score = 16.5 bits (31), Expect = 4312 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 KQSVQLIEK 9 +Q++QL+EK Sbjct: 203 EQAIQLLEK 211>NP_003817 Length = 312 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 QSVQLIEK 9 ++VQLIEK Sbjct: 93 EAVQLIEK 100>NP_001002912 Length = 1530 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 K+S QL++K Sbjct: 757 KESQQLVQK 765>NP_002968 Length = 1977 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQS+ LIE+ Sbjct: 17 KQSLALIEQ 25>NP_003038 Length = 815 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KQSVQLIE 8 KQ+++L+E Sbjct: 583 KQAIELVE 590>NP_005779 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ+V L+EK Sbjct: 481 KQTVFLLEK 489>NP_001138639 Length = 454 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ+V L+EK Sbjct: 404 KQTVFLLEK 412>NP_001138638 Length = 469 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ+V L+EK Sbjct: 419 KQTVFLLEK 427>XP_006718184 Length = 367 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ+V L+EK Sbjct: 317 KQTVFLLEK 325>XP_005252787 Length = 498 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQ+V L+EK Sbjct: 448 KQTVFLLEK 456>XP_005246814 Length = 1988 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 KQS+ LIE+ Sbjct: 17 KQSLALIEQ 25>XP_005270507 Length = 788 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 K+S QL++K Sbjct: 15 KESQQLVQK 23>XP_006710414 Length = 834 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 K+S QL++K Sbjct: 61 KESQQLVQK 69>XP_006710413 Length = 848 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 K+S QL++K Sbjct: 75 KESQQLVQK 83>XP_006710412 Length = 1333 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 K+S QL++K Sbjct: 560 KESQQLVQK 568>XP_006710411 Length = 1528 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQSVQLIEK 9 K+S QL++K Sbjct: 755 KESQQLVQK 763Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.303 0.121 0.265 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 311,367 Number of extensions: 478 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |