Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001261 21 175 XP_005271924 21 175 XP_005271923 21 175 NP_000713 17 4312 XP_006716184 17 4312 XP_006716183 17 4312 XP_005250631 17 4312 XP_005250630 17 4312 XP_006716182 17 4312 XP_005250629 17 4312 XP_005250627 17 4312 XP_006716181 17 4312 NP_001265855 16 7355 NP_001265856 16 7355 NP_001264198 16 7355 NP_001265858 16 7355 NP_056157 16 7355 XP_005248532 16 7355 XP_005248531 16 7355 XP_006714646 16 7355 XP_006714645 16 7355 NP_001952 15 9605 NP_001239058 15 9605 NP_036453 15 9605 NP_001239004 15 9605 NP_001239002 15 9605 NP_004776 15 9605 NP_001123484 15 9605 NP_001239005 15 9605 XP_005260064 15 9605 XP_005260063 15 9605 XP_005260062 15 9605 XP_005260061 15 9605 XP_005255760 15 9605 XP_006721044 15 9605 XP_005255759 15 9605 NP_001004759 15 9605>NP_001261 Length = 1710 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQQNVRGM+ Sbjct: 339 KQQNVRGMK 347>XP_005271924 Length = 1710 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQQNVRGM+ Sbjct: 339 KQQNVRGMK 347>XP_005271923 Length = 1798 Score = 21.2 bits (43), Expect = 175 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQQNVRGM+ Sbjct: 339 KQQNVRGMK 347>NP_000713 Length = 1091 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 710 KQKNIKGVK 718>XP_006716184 Length = 580 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 199 KQKNIKGVK 207>XP_006716183 Length = 1071 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 690 KQKNIKGVK 698>XP_005250631 Length = 1079 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 698 KQKNIKGVK 706>XP_005250630 Length = 1084 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 703 KQKNIKGVK 711>XP_006716182 Length = 1085 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 704 KQKNIKGVK 712>XP_005250629 Length = 1086 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 705 KQKNIKGVK 713>XP_005250627 Length = 1103 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 722 KQKNIKGVK 730>XP_006716181 Length = 1110 Score = 16.5 bits (31), Expect = 4312 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 KQQNVRGMR 9 KQ+N++G++ Sbjct: 729 KQKNIKGVK 737>NP_001265855 Length = 616 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 364 KQENIRVMQ 372>NP_001265856 Length = 506 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 254 KQENIRVMQ 262>NP_001264198 Length = 2925 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 QNVRGMR 9 +NV+GMR Sbjct: 47 RNVKGMR 53>NP_001265858 Length = 490 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 238 KQENIRVMQ 246>NP_056157 Length = 646 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 394 KQENIRVMQ 402>XP_005248532 Length = 323 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 71 KQENIRVMQ 79>XP_005248531 Length = 346 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 94 KQENIRVMQ 102>XP_006714646 Length = 550 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 298 KQENIRVMQ 306>XP_006714645 Length = 604 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KQQNVRGMR 9 KQ+N+R M+ Sbjct: 352 KQENIRVMQ 360>NP_001952 Length = 858 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 QQNVRGMR 9 ++N+RG+R Sbjct: 694 EENMRGVR 701>NP_001239058 Length = 125 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KQQNVRGM 8 KQQ RGM Sbjct: 83 KQQKGRGM 90>NP_036453 Length = 139 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KQQNVRGM 8 KQQ RGM Sbjct: 97 KQQKGRGM 104>NP_001239004 Length = 224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 89 QNVEGLR 95>NP_001239002 Length = 226 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 91 QNVEGLR 97>NP_004776 Length = 326 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 202 QNVEGLR 208>NP_001123484 Length = 337 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 202 QNVEGLR 208>NP_001239005 Length = 215 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 91 QNVEGLR 97>XP_005260064 Length = 1699 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KQQNVRGM 8 +QQ +RGM Sbjct: 674 QQQQLRGM 681>XP_005260063 Length = 1756 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KQQNVRGM 8 +QQ +RGM Sbjct: 674 QQQQLRGM 681>XP_005260062 Length = 1832 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KQQNVRGM 8 +QQ +RGM Sbjct: 674 QQQQLRGM 681>XP_005260061 Length = 1889 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KQQNVRGM 8 +QQ +RGM Sbjct: 674 QQQQLRGM 681>XP_005255760 Length = 202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 67 QNVEGLR 73>XP_006721044 Length = 202 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 67 QNVEGLR 73>XP_005255759 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 QNVRGMR 9 QNV G+R Sbjct: 250 QNVEGLR 256>NP_001004759 Length = 354 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 4 NVRGMR 9 NVRG+R Sbjct: 345 NVRGLR 350Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.129 0.348 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 485,505 Number of extensions: 635 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |