Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 20 509 NP_036462 20 509 NP_001243397 20 509 NP_859526 20 509 NP_002543 20 509 NP_001177810 20 509 NP_001177808 20 509 NP_001177811 20 509 NP_859525 20 509 XP_005269721 20 509 XP_006712619 20 509 NP_001017969 18 1482 XP_006716793 18 1482 XP_005251442 18 1482 NP_056355 17 4312 XP_006720533 17 4312 XP_006720532 17 4312 XP_005254354 17 4312 NP_775762 17 4312 NP_001366 16 5631 NP_683701 16 7355 NP_001139 16 7355 XP_003960376 16 7355 XP_006716052 16 7355 XP_006716051 16 7355 XP_006714257 16 7355 XP_005263002 16 7355 XP_005262999 16 7355 XP_006714252 16 7355 XP_006714251 16 7355 XP_006714250 16 7355 XP_003403558 16 7355 XP_006710844 16 7355 XP_003846715 16 7355 NP_000950 16 7355 NP_001034674 16 7355 NP_006827 15 9605 NP_001013682 15 9605 XP_005270918 15 9605>NP_001243398 Length = 1781 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 KPVL KAFQ Sbjct: 894 KPVLRKAFQ 902>NP_036462 Length = 2073 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 KPVL KAFQ Sbjct: 1186 KPVLRKAFQ 1194>NP_001243397 Length = 1890 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 KPVL KAFQ Sbjct: 1003 KPVLRKAFQ 1011>NP_859526 Length = 436 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 369 KPVVMKAFE 377>NP_002543 Length = 436 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 369 KPVVMKAFE 377>NP_001177810 Length = 352 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 285 KPVVMKAFE 293>NP_001177808 Length = 436 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 369 KPVVMKAFE 377>NP_001177811 Length = 362 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 295 KPVVMKAFE 303>NP_859525 Length = 436 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 369 KPVVMKAFE 377>XP_005269721 Length = 2073 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 KPVL KAFQ Sbjct: 1186 KPVLRKAFQ 1194>XP_006712619 Length = 352 Score = 19.6 bits (39), Expect = 509 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KPVLMKAFQ 9 KPV+MKAF+ Sbjct: 285 KPVVMKAFE 293>NP_001017969 Length = 2103 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 +P LMKAFQ Sbjct: 822 EPKLMKAFQ 830>XP_006716793 Length = 1317 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 +P LMKAFQ Sbjct: 36 EPKLMKAFQ 44>XP_005251442 Length = 2073 Score = 18.1 bits (35), Expect = 1482 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 +P LMKAFQ Sbjct: 792 EPKLMKAFQ 800>NP_056355 Length = 1393 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PVLMKAFQ 9 PVLM+A Q Sbjct: 696 PVLMRALQ 703>XP_006720533 Length = 1098 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PVLMKAFQ 9 PVLM+A Q Sbjct: 401 PVLMRALQ 408>XP_006720532 Length = 1333 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PVLMKAFQ 9 PVLM+A Q Sbjct: 636 PVLMRALQ 643>XP_005254354 Length = 1393 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 PVLMKAFQ 9 PVLM+A Q Sbjct: 696 PVLMRALQ 703>NP_775762 Length = 360 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KPVLMKAFQ 9 KPVL KA++ Sbjct: 207 KPVLGKAYE 215>NP_001366 Length = 360 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 PVLMKAFQ 9 P L KAFQ Sbjct: 331 PALWKAFQ 338>NP_683701 Length = 409 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 KPVLMKAF 8 KPV+ K F Sbjct: 381 KPVIFKVF 388>NP_001139 Length = 3957 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 1993 LMKAFQ 1998>XP_003960376 Length = 196 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KPVLMKAFQ 9 +P L+ AFQ Sbjct: 138 RPTLLAAFQ 146>XP_006716052 Length = 1409 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KPVLMKA 7 KP++MKA Sbjct: 16 KPLIMKA 22>XP_006716051 Length = 1427 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KPVLMKA 7 KP++MKA Sbjct: 16 KPLIMKA 22>XP_006714257 Length = 4145 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 2002 LMKAFQ 2007>XP_005263002 Length = 4072 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 1960 LMKAFQ 1965>XP_005262999 Length = 4147 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 2004 LMKAFQ 2009>XP_006714252 Length = 4153 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 2010 LMKAFQ 2015>XP_006714251 Length = 4165 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 2022 LMKAFQ 2027>XP_006714250 Length = 4190 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 LMKAFQ 9 LMKAFQ Sbjct: 2047 LMKAFQ 2052>XP_003403558 Length = 196 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KPVLMKAFQ 9 +P L+ AFQ Sbjct: 138 RPTLLAAFQ 146>XP_006710844 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLMKAFQ 9 +LMKA+Q Sbjct: 50 ILMKAYQ 56>XP_003846715 Length = 196 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KPVLMKAFQ 9 +P L+ AFQ Sbjct: 138 RPTLLAAFQ 146>NP_000950 Length = 359 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLMKAFQ 9 +LMKA+Q Sbjct: 50 ILMKAYQ 56>NP_001034674 Length = 297 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VLMKAFQ 9 +LMKA+Q Sbjct: 50 ILMKAYQ 56>NP_006827 Length = 2671 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 PVLMKAFQ 9 P++ +AFQ Sbjct: 1618 PIVQRAFQ 1625>NP_001013682 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KPVLMKAF 8 KPV KAF Sbjct: 396 KPVWSKAF 403>XP_005270918 Length = 592 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KPVLMKAF 8 KPV KAF Sbjct: 396 KPVWSKAF 403Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.331 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 482,386 Number of extensions: 720 Number of successful extensions: 39 Number of sequences better than 10000.0: 39 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 39 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |