Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002961 18 1935 NP_112190 16 7355 NP_872393 15 9605 XP_005270205 15 9605 XP_006712515 15 9605 XP_006712514 15 9605 XP_006712513 15 9605 XP_006712512 15 9605 XP_006712511 15 9605 XP_006712510 15 9605 XP_006712509 15 9605 XP_005246533 15 9605 XP_006712508 15 9605 NP_115893 15 9605 NP_076950 15 9605>NP_002961 Length = 171 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 KNISQMALR 9 KN+SQ+A+R Sbjct: 111 KNLSQVAMR 119>NP_112190 Length = 546 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KNISQMALR 9 K +SQ+ALR Sbjct: 377 KALSQLALR 385>NP_872393 Length = 3234 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1510 NISSVALR 1517>XP_005270205 Length = 672 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KNISQMAL 8 KN+++MA+ Sbjct: 335 KNVTEMAM 342>XP_006712515 Length = 3232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1508 NISSVALR 1515>XP_006712514 Length = 2496 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1581 NISSVALR 1588>XP_006712513 Length = 3220 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1477 NISSVALR 1484>XP_006712512 Length = 3237 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1513 NISSVALR 1520>XP_006712511 Length = 3256 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1513 NISSVALR 1520>XP_006712510 Length = 3305 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1581 NISSVALR 1588>XP_006712509 Length = 3319 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1576 NISSVALR 1583>XP_005246533 Length = 3323 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1581 NISSVALR 1588>XP_006712508 Length = 3324 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1581 NISSVALR 1588>NP_115893 Length = 3258 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 NISQMALR 9 NIS +ALR Sbjct: 1515 NISSVALR 1522>NP_076950 Length = 737 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KNISQMAL 8 KN+++MA+ Sbjct: 400 KNVTEMAM 407Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.124 0.295 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 247,100 Number of extensions: 245 Number of successful extensions: 15 Number of sequences better than 10000.0: 15 Number of HSP's gapped: 15 Number of HSP's successfully gapped: 15 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |