Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value XP_005249968 18 1935 NP_001075 17 4312 XP_005259906 17 4312 NP_116184 16 5631 NP_001138299 16 5631 NP_037453 16 7355 NP_001274448 16 7355 NP_001274449 16 7355 NP_068659 16 7355 NP_068658 16 7355 NP_004349 16 7355 NP_001274447 16 7355 NP_001274453 16 7355 NP_001274445 16 7355 NP_001274451 16 7355 NP_001274446 16 7355 NP_004659 16 7355 NP_114122 16 7355 NP_001188395 16 7355 NP_689648 16 7355 XP_006716232 16 7355 XP_006716231 16 7355 XP_006714567 16 7355 XP_006714566 16 7355 NP_001164099 15 9605 NP_001130010 15 9605 NP_001035370 15 9605 XP_005271470 15 9605 XP_005271469 15 9605 NP_006780 15 9605 NP_079523 15 9605 NP_004224 15 9605 NP_689800 15 9605>XP_005249968 Length = 673 Score = 17.7 bits (34), Expect = 1935 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 MRMEMPQD 9 +++EMPQD Sbjct: 9 LKLEMPQD 16>NP_001075 Length = 738 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 2 MRMEMPQ 8 +RME+PQ Sbjct: 472 LRMELPQ 478>XP_005259906 Length = 206 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KMRMEMPQ 8 K+R E+PQ Sbjct: 168 KLRQELPQ 175>NP_116184 Length = 377 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KMRMEMPQD 9 ++R+EMP + Sbjct: 355 RLRLEMPNE 363>NP_001138299 Length = 346 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KMRMEMPQD 9 ++R+EMP + Sbjct: 324 RLRLEMPNE 332>NP_037453 Length = 465 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RMEMPQ 8 RM+MPQ Sbjct: 53 RMQMPQ 58>NP_001274448 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 223 RLERPQD 229>NP_001274449 Length = 468 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 223 RLERPQD 229>NP_068659 Length = 580 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 335 RLERPQD 341>NP_068658 Length = 539 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 294 RLERPQD 300>NP_004349 Length = 566 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 321 RLERPQD 327>NP_001274447 Length = 489 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 244 RLERPQD 250>NP_001274453 Length = 388 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 143 RLERPQD 149>NP_001274445 Length = 516 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 271 RLERPQD 277>NP_001274451 Length = 427 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 182 RLERPQD 188>NP_001274446 Length = 502 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 R+E PQD Sbjct: 257 RLERPQD 263>NP_004659 Length = 1857 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 K+ ME+P D Sbjct: 801 KVEMELPGD 809>NP_114122 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRMEMP 7 K RMEMP Sbjct: 58 KDRMEMP 64>NP_001188395 Length = 230 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRMEMP 7 K RMEMP Sbjct: 58 KDRMEMP 64>NP_689648 Length = 426 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MRMEMPQ 8 MRM MP+ Sbjct: 355 MRMSMPE 361>XP_006716232 Length = 2753 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 K+ ME+P D Sbjct: 801 KVEMELPGD 809>XP_006716231 Length = 2753 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 K+ ME+P D Sbjct: 801 KVEMELPGD 809>XP_006714567 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRMEMP 7 K RMEMP Sbjct: 58 KDRMEMP 64>XP_006714566 Length = 257 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRMEMP 7 K RMEMP Sbjct: 58 KDRMEMP 64>NP_001164099 Length = 952 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 KM++ +P D Sbjct: 15 KMKVSLPSD 23>NP_001130010 Length = 1090 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 K ME+P+D Sbjct: 291 KKTMEIPKD 299>NP_001035370 Length = 204 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 RME PQ+ Sbjct: 59 RMETPQE 65>XP_005271470 Length = 282 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 KM+M +P D Sbjct: 251 KMQMGIPDD 259>XP_005271469 Length = 295 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 KM+M +P D Sbjct: 264 KMQMGIPDD 272>NP_006780 Length = 224 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 K+R+ PQD Sbjct: 175 KLRIMKPQD 183>NP_079523 Length = 1059 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 K ME+P+D Sbjct: 260 KKTMEIPKD 268>NP_004224 Length = 205 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RMEMPQD 9 RME PQ+ Sbjct: 59 RMETPQE 65>NP_689800 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KMRMEMPQD 9 KM+M +P D Sbjct: 282 KMQMGIPDD 290Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.127 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 708,168 Number of extensions: 1033 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |