Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 18 1482 NP_005913 18 1482 XP_005267046 18 1482 XP_005267045 18 1482 NP_001181966 17 2528 NP_001071174 17 2528 XP_006715535 17 2528 NP_001186184 17 4312 NP_001186182 17 4312 NP_001186180 17 4312 NP_001012411 17 4312 NP_001012409 17 4312 NP_001012413 17 4312 NP_001012410 17 4312 NP_001186185 17 4312 NP_612493 17 4312 NP_001012412 17 4312 NP_001186181 17 4312 NP_001186183 17 4312 XP_006713050 17 4312 XP_006713049 17 4312 XP_005246719 16 5631 XP_005246718 16 5631 NP_060556 16 5631 NP_067641 16 7355 NP_001159432 16 7355 NP_004516 16 7355 NP_000607 16 7355 NP_006763 16 7355 NP_892121 16 7355 NP_056311 16 7355 XP_005256802 16 7355 XP_006712591 16 7355 XP_006712590 16 7355 XP_006712589 16 7355 NP_061834 15 9605 NP_001001895 15 9605 XP_006724076 15 9605>NP_006715 Length = 1558 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMRCTASQL 9 KMR TASQL Sbjct: 1537 KMRWTASQL 1545>NP_005913 Length = 1608 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMRCTASQL 9 KMR TASQL Sbjct: 1587 KMRWTASQL 1595>XP_005267046 Length = 1554 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMRCTASQL 9 KMR TASQL Sbjct: 1533 KMRWTASQL 1541>XP_005267045 Length = 1604 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMRCTASQL 9 KMR TASQL Sbjct: 1583 KMRWTASQL 1591>NP_001181966 Length = 904 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRCTASQL 9 +RCT SQL Sbjct: 52 LRCTKSQL 59>NP_001071174 Length = 904 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRCTASQL 9 +RCT SQL Sbjct: 52 LRCTKSQL 59>XP_006715535 Length = 946 Score = 17.3 bits (33), Expect = 2528 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MRCTASQL 9 +RCT SQL Sbjct: 52 LRCTKSQL 59>NP_001186184 Length = 258 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 206 KRRCTAS 212>NP_001186182 Length = 275 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 223 KRRCTAS 229>NP_001186180 Length = 527 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 475 KRRCTAS 481>NP_001012411 Length = 275 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 223 KRRCTAS 229>NP_001012409 Length = 527 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 475 KRRCTAS 481>NP_001012413 Length = 258 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 206 KRRCTAS 212>NP_001012410 Length = 561 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 475 KRRCTAS 481>NP_001186185 Length = 292 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 206 KRRCTAS 212>NP_612493 Length = 292 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 206 KRRCTAS 212>NP_001012412 Length = 309 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 223 KRRCTAS 229>NP_001186181 Length = 561 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 475 KRRCTAS 481>NP_001186183 Length = 309 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 223 KRRCTAS 229>XP_006713050 Length = 527 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 475 KRRCTAS 481>XP_006713049 Length = 527 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 KMRCTAS 7 K RCTAS Sbjct: 475 KRRCTAS 481>XP_005246719 Length = 748 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RCTASQL 9 RC ASQL Sbjct: 526 RCIASQL 532>XP_005246718 Length = 785 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RCTASQL 9 RC ASQL Sbjct: 563 RCIASQL 569>NP_060556 Length = 759 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 3 RCTASQL 9 RC ASQL Sbjct: 537 RCIASQL 543>NP_067641 Length = 711 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KMRCTA 6 K+RCTA Sbjct: 54 KVRCTA 59>NP_001159432 Length = 843 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KMRCTA 6 K+RCTA Sbjct: 186 KVRCTA 191>NP_004516 Length = 4655 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MRCTASQ 8 + CTASQ Sbjct: 1185 LNCTASQ 1191>NP_000607 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KMRCTASQ 8 ++ CTASQ Sbjct: 38 ELTCTASQ 45>NP_006763 Length = 1343 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MRCTASQL 9 ++CTAS L Sbjct: 529 IKCTASSL 536>NP_892121 Length = 1147 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RCTASQ 8 RCTAS+ Sbjct: 780 RCTASE 785>NP_056311 Length = 1812 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 RCTASQ 8 RCTAS+ Sbjct: 780 RCTASE 785>XP_005256802 Length = 867 Score = 15.8 bits (29), Expect = 7355 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KMRCTA 6 K+RCTA Sbjct: 210 KVRCTA 215>XP_006712591 Length = 3308 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MRCTASQ 8 + CTASQ Sbjct: 1185 LNCTASQ 1191>XP_006712590 Length = 3897 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MRCTASQ 8 + CTASQ Sbjct: 422 LNCTASQ 428>XP_006712589 Length = 4660 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 MRCTASQ 8 + CTASQ Sbjct: 1185 LNCTASQ 1191>NP_061834 Length = 661 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RCTASQL 9 RCTAS + Sbjct: 564 RCTASMV 570>NP_001001895 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RCTASQL 9 RCTAS + Sbjct: 526 RCTASMV 532>XP_006724076 Length = 642 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 3 RCTASQL 9 RCTAS + Sbjct: 545 RCTASMV 551Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.328 0.119 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 456,347 Number of extensions: 278 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |