Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001277251 18 1935 NP_005500 18 1935 NP_001277250 18 1935 XP_005271970 18 1935 XP_005271969 18 1935 XP_005271967 18 1935 XP_005271966 18 1935 NP_056078 17 2528 NP_001167587 17 2528 NP_001167588 17 2528 XP_005254315 17 2528 XP_005254314 17 2528 XP_006720509 17 2528 XP_005254313 17 2528 XP_005254312 17 2528 NP_001277002 16 5631 NP_067547 16 5631 NP_003390 16 5631 NP_001277001 16 5631 XP_005249317 16 5631 NP_002988 16 7355 NP_001006947 16 7355 NP_001028690 16 7355 NP_056425 16 7355 NP_001243689 16 7355 NP_000859 16 7355 NP_775760 15 9605 NP_689548 15 9605 NP_001363 15 9605 XP_006721530 15 9605 XP_006721529 15 9605 XP_006721528 15 9605 XP_006714502 15 9605 NP_803875 15 9605>NP_001277251 Length = 2854 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1473 MKKKAVIW 1480>NP_005500 Length = 3027 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1646 MKKKAVIW 1653>NP_001277250 Length = 3048 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1646 MKKKAVIW 1653>XP_005271970 Length = 2931 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1646 MKKKAVIW 1653>XP_005271969 Length = 3020 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1580 MKKKAVIW 1587>XP_005271967 Length = 3065 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1646 MKKKAVIW 1653>XP_005271966 Length = 3086 Score = 17.7 bits (34), Expect = 1935 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AVIW Sbjct: 1646 MKKKAVIW 1653>NP_056078 Length = 3036 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>NP_001167587 Length = 3037 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>NP_001167588 Length = 2400 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1037 MKKKAVVW 1044>XP_005254315 Length = 2576 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>XP_005254314 Length = 2605 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>XP_006720509 Length = 2646 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>XP_005254313 Length = 3057 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>XP_005254312 Length = 3058 Score = 17.3 bits (33), Expect = 2528 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 M K+AV+W Sbjct: 1673 MKKKAVVW 1680>NP_001277002 Length = 383 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KMMKRAVIW 9 +M+K+A +W Sbjct: 126 QMLKKAKLW 134>NP_067547 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KMMKRAVIW 9 +M+K+A +W Sbjct: 220 QMLKKAKLW 228>NP_003390 Length = 674 Score = 16.2 bits (30), Expect = 5631 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 MKRAVIW 9 MK+A +W Sbjct: 106 MKKAAVW 112>NP_001277001 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KMMKRAVIW 9 +M+K+A +W Sbjct: 220 QMLKKAKLW 228>XP_005249317 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KMMKRAVIW 9 +M+K+A +W Sbjct: 220 QMLKKAKLW 228>NP_002988 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 MKRAVIW 9 M+RA +W Sbjct: 1 MRRAALW 7>NP_001006947 Length = 310 Score = 15.8 bits (29), Expect = 7355 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 MKRAVIW 9 M+RA +W Sbjct: 1 MRRAALW 7>NP_001028690 Length = 443 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 KRAVIW 9 +RAV+W Sbjct: 38 RRAVVW 43>NP_056425 Length = 454 Score = 15.8 bits (29), Expect = 7355 Identities = 4/6 (66%), Positives = 6/6 (100%) Query: 4 KRAVIW 9 +RAV+W Sbjct: 38 RRAVVW 43>NP_001243689 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 +MK A++W Sbjct: 172 IMKIAIVW 179>NP_000859 Length = 458 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 MMKRAVIW 9 +MK A++W Sbjct: 172 IMKIAIVW 179>NP_775760 Length = 1585 Score = 15.4 bits (28), Expect = 9605 Identities = 3/9 (33%), Positives = 7/9 (77%) Query: 1 KMMKRAVIW 9 ++MK ++W Sbjct: 1288 ELMKEPILW 1296>NP_689548 Length = 531 Score = 15.4 bits (28), Expect = 9605 Identities = 4/6 (66%), Positives = 5/6 (83%) Query: 4 KRAVIW 9 KRA +W Sbjct: 86 KRAAVW 91>NP_001363 Length = 4486 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 KMMKRAVIW 9 ++MKR +W Sbjct: 2169 QIMKRRPVW 2177>XP_006721530 Length = 2746 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 KMMKRAVIW 9 ++MKR +W Sbjct: 2169 QIMKRRPVW 2177>XP_006721529 Length = 2817 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 KMMKRAVIW 9 ++MKR +W Sbjct: 2169 QIMKRRPVW 2177>XP_006721528 Length = 3869 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 KMMKRAVIW 9 ++MKR +W Sbjct: 2169 QIMKRRPVW 2177>XP_006714502 Length = 1064 Score = 15.4 bits (28), Expect = 9605 Identities = 3/9 (33%), Positives = 7/9 (77%) Query: 1 KMMKRAVIW 9 ++MK ++W Sbjct: 771 ELMKEPILW 779>NP_803875 Length = 4243 Score = 15.4 bits (28), Expect = 9605 Identities = 4/7 (57%), Positives = 6/7 (85%) Query: 3 MKRAVIW 9 M+R +IW Sbjct: 3072 MERLIIW 3078Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.338 0.130 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 358,895 Number of extensions: 497 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |