Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000537 18 1135 NP_001263689 18 1135 NP_001119584 18 1135 NP_001119586 18 1135 NP_001263625 18 1135 NP_001119590 18 1135 NP_001263690 18 1135 NP_001119585 18 1135 NP_001263624 18 1135 NP_001155197 17 4312 NP_848702 17 4312 NP_001155198 17 4312 NP_848701 17 4312 NP_002710 17 4312 NP_001257405 17 4312 NP_006236 17 4312 NP_851308 17 4312 NP_851307 17 4312 XP_005267884 17 4312 XP_005267883 17 4312 XP_005267881 17 4312 XP_005267880 17 4312 XP_005267879 17 4312 XP_005267877 17 4312 XP_005267876 17 4312 NP_443732 17 4312 NP_001068 16 5631 NP_001073990 16 7355 NP_005438 16 7355 NP_001299 15 9605 XP_006714215 15 9605 XP_006714214 15 9605 XP_005262915 15 9605 NP_055806 15 9605>NP_000537 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 132 KMFCQLAKT 140>NP_001263689 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 93 KMFCQLAKT 101>NP_001119584 Length = 393 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 132 KMFCQLAKT 140>NP_001119586 Length = 341 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 132 KMFCQLAKT 140>NP_001263625 Length = 302 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 93 KMFCQLAKT 101>NP_001119590 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 93 KMFCQLAKT 101>NP_001263690 Length = 354 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 93 KMFCQLAKT 101>NP_001119585 Length = 346 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 132 KMFCQLAKT 140>NP_001263624 Length = 307 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KMFRQLAKT 9 KMF QLAKT Sbjct: 93 KMFCQLAKT 101>NP_001155197 Length = 555 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 358 LFRQLAK 364>NP_848702 Length = 449 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 327 LFRQLAK 333>NP_001155198 Length = 540 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 382 LFRQLAK 388>NP_848701 Length = 485 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 327 LFRQLAK 333>NP_002710 Length = 524 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 327 LFRQLAK 333>NP_001257405 Length = 451 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 252 LFRQLAK 258>NP_006236 Length = 602 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 403 LFRQLAK 409>NP_851308 Length = 496 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 297 LFRQLAK 303>NP_851307 Length = 570 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 371 LFRQLAK 377>XP_005267884 Length = 449 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 252 LFRQLAK 258>XP_005267883 Length = 500 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 303 LFRQLAK 309>XP_005267881 Length = 539 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 387 LFRQLAK 393>XP_005267880 Length = 545 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 387 LFRQLAK 393>XP_005267879 Length = 556 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 387 LFRQLAK 393>XP_005267877 Length = 579 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 382 LFRQLAK 388>XP_005267876 Length = 584 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 MFRQLAK 8 +FRQLAK Sbjct: 387 LFRQLAK 393>NP_443732 Length = 358 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KMFRQLA 7 KMFRQL+ Sbjct: 115 KMFRQLS 121>NP_001068 Length = 530 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 FRQLAKT 9 FR+LAKT Sbjct: 517 FRKLAKT 523>NP_001073990 Length = 507 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KMFRQLAK 8 K FR+LAK Sbjct: 179 KAFRKLAK 186>NP_005438 Length = 435 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KMFRQLAK 8 K FR+LAK Sbjct: 163 KTFRKLAK 170>NP_001299 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KMFRQLAK 8 K+F++LAK Sbjct: 249 KLFQKLAK 256>XP_006714215 Length = 3544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KMFRQLAK 8 K FR LAK Sbjct: 2765 KTFRNLAK 2772>XP_006714214 Length = 3544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KMFRQLAK 8 K FR LAK Sbjct: 2765 KTFRNLAK 2772>XP_005262915 Length = 3544 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KMFRQLAK 8 K FR LAK Sbjct: 2765 KTFRNLAK 2772>NP_055806 Length = 3526 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 1 KMFRQLAK 8 K FR LAK Sbjct: 2747 KTFRNLAK 2754Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.335 0.132 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,075 Number of extensions: 393 Number of successful extensions: 34 Number of sequences better than 10000.0: 34 Number of HSP's gapped: 34 Number of HSP's successfully gapped: 34 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |