Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006197 18 1135 XP_006714104 18 1135 XP_005265800 18 1135 XP_006714103 18 1135 XP_006714102 18 1135 NP_004357 17 4312 NP_001164560 17 4312 NP_001164559 17 4312 NP_001164558 17 4312 NP_005968 17 4312 NP_036430 17 4312 NP_898865 17 4312 NP_898864 17 4312 XP_005266543 17 4312 XP_005266542 17 4312 XP_006713552 17 4312 XP_006713551 17 4312 NP_001155971 17 4312 NP_001180442 16 5631 NP_001180443 16 5631 NP_060434 16 5631 NP_001180444 16 5631 XP_006712111 16 5631 XP_006712110 16 5631 XP_006712109 16 5631 NP_000531 16 7355 NP_001036188 16 7355 NP_001158238 16 7355 NP_116176 16 7355 NP_008816 16 7355 NP_443152 16 7355 XP_006723382 16 7355 XP_006723381 16 7355 XP_006723380 16 7355 XP_005256014 16 7355 XP_005247896 16 7355 XP_006713857 16 7355 XP_006711992 16 7355 NP_803237 16 7355 NP_115605 15 9605>NP_006197 Length = 1089 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLVSTLTVP 9 KLV TLTVP Sbjct: 270 KLVYTLTVP 278>XP_006714104 Length = 832 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLVSTLTVP 9 KLV TLTVP Sbjct: 295 KLVYTLTVP 303>XP_005265800 Length = 1089 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLVSTLTVP 9 KLV TLTVP Sbjct: 270 KLVYTLTVP 278>XP_006714103 Length = 1111 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLVSTLTVP 9 KLV TLTVP Sbjct: 292 KLVYTLTVP 300>XP_006714102 Length = 1114 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLVSTLTVP 9 KLV TLTVP Sbjct: 295 KLVYTLTVP 303>NP_004357 Length = 898 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 L+STLT P Sbjct: 373 LISTLTFP 380>NP_001164560 Length = 869 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 L+STLT P Sbjct: 373 LISTLTFP 380>NP_001164559 Length = 854 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 L+STLT P Sbjct: 329 LISTLTFP 336>NP_001164558 Length = 881 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 L+STLT P Sbjct: 373 LISTLTFP 380>NP_005968 Length = 685 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSTLTVP 9 VST+TVP Sbjct: 457 VSTITVP 463>NP_036430 Length = 1119 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVSTLTVP 9 KL+S LT P Sbjct: 683 KLISLLTAP 691>NP_898865 Length = 685 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSTLTVP 9 VST+TVP Sbjct: 457 VSTITVP 463>NP_898864 Length = 685 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSTLTVP 9 VST+TVP Sbjct: 457 VSTITVP 463>XP_005266543 Length = 685 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSTLTVP 9 VST+TVP Sbjct: 457 VSTITVP 463>XP_005266542 Length = 685 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VSTLTVP 9 VST+TVP Sbjct: 457 VSTITVP 463>XP_006713552 Length = 863 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 L+STLT P Sbjct: 373 LISTLTFP 380>XP_006713551 Length = 872 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 L+STLT P Sbjct: 347 LISTLTFP 354>NP_001155971 Length = 1236 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVSTLTVP 9 KL+S LT P Sbjct: 776 KLISLLTAP 784>NP_001180442 Length = 501 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 363 LVSTLTV 369>NP_001180443 Length = 438 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 300 LVSTLTV 306>NP_060434 Length = 461 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 323 LVSTLTV 329>NP_001180444 Length = 432 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 294 LVSTLTV 300>XP_006712111 Length = 264 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 126 LVSTLTV 132>XP_006712110 Length = 387 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 249 LVSTLTV 255>XP_006712109 Length = 445 Score = 16.2 bits (30), Expect = 5631 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 LVSTLTV 8 LVSTLTV Sbjct: 307 LVSTLTV 313>NP_000531 Length = 5038 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KLVSTLTV 8 KLVSTL V Sbjct: 1843 KLVSTLLV 1850>NP_001036188 Length = 5033 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KLVSTLTV 8 KLVSTL V Sbjct: 1843 KLVSTLLV 1850>NP_001158238 Length = 2789 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLVSTLTVP 9 KL+ T+T P Sbjct: 370 KLIMTVTTP 378>NP_116176 Length = 797 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KLVSTLTV 8 K+VSTL+V Sbjct: 669 KIVSTLSV 676>NP_008816 Length = 3703 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLVSTLTVP 9 KL+ T+T P Sbjct: 1284 KLIMTVTTP 1292>NP_443152 Length = 875 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 LVS +TVP Sbjct: 665 LVSRMTVP 672>XP_006723382 Length = 5027 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KLVSTLTV 8 KLVSTL V Sbjct: 1843 KLVSTLLV 1850>XP_006723381 Length = 5031 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KLVSTLTV 8 KLVSTL V Sbjct: 1842 KLVSTLLV 1849>XP_006723380 Length = 5032 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KLVSTLTV 8 KLVSTL V Sbjct: 1843 KLVSTLLV 1850>XP_005256014 Length = 3702 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLVSTLTVP 9 KL+ T+T P Sbjct: 1283 KLIMTVTTP 1291>XP_005247896 Length = 502 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KLVSTLTV 8 K+VSTL+V Sbjct: 374 KIVSTLSV 381>XP_006713857 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KLVSTLTV 8 K+VSTL+V Sbjct: 432 KIVSTLSV 439>XP_006711992 Length = 875 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LVSTLTVP 9 LVS +TVP Sbjct: 665 LVSRMTVP 672>NP_803237 Length = 826 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 STLTVP 9 STLTVP Sbjct: 74 STLTVP 79>NP_115605 Length = 841 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLVSTLTVP 9 K+VS ++VP Sbjct: 54 KMVSEISVP 62Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.127 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 327,904 Number of extensions: 614 Number of successful extensions: 40 Number of sequences better than 10000.0: 40 Number of HSP's gapped: 40 Number of HSP's successfully gapped: 40 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |