Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001239049 17 4312 NP_055963 17 4312 NP_001239053 17 4312 NP_001239051 17 4312 NP_001239048 17 4312 XP_005247048 17 4312 XP_005247047 17 4312 XP_006725868 16 5631 XP_006725749 16 5631 NP_056127 16 7355 XP_006714407 16 7355 XP_006714406 16 7355 XP_006714405 16 7355 XP_005263349 16 7355 XP_005263348 16 7355 XP_005263347 16 7355 XP_005263346 16 7355 XP_005263345 16 7355 XP_005263344 16 7355 XP_005263343 16 7355 XP_005263342 16 7355 XP_005263341 16 7355 XP_005263340 16 7355 XP_005263339 16 7355 NP_006436 15 9605 NP_001073932 15 9605 NP_001368 15 9605 NP_612201 15 9605 XP_006721797 15 9605 XP_006721796 15 9605 XP_006718966 15 9605>NP_001239049 Length = 1323 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 1078 QLVMEKHGS 1086>NP_055963 Length = 1323 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 1078 QLVMEKHGS 1086>NP_001239053 Length = 1143 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 1078 QLVMEKHGS 1086>NP_001239051 Length = 1288 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 1043 QLVMEKHGS 1051>NP_001239048 Length = 1330 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 1078 QLVMEKHGS 1086>XP_005247048 Length = 1107 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 862 QLVMEKHGS 870>XP_005247047 Length = 1137 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLVMESHSS 9 +LVME H S Sbjct: 892 QLVMEKHGS 900>XP_006725868 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMESHSS 9 +M+SHSS Sbjct: 23 IMQSHSS 29>XP_006725749 Length = 315 Score = 16.2 bits (30), Expect = 5631 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMESHSS 9 +M+SHSS Sbjct: 23 IMQSHSS 29>NP_056127 Length = 5005 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_006714407 Length = 5004 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3056 KYIMEEHDS 3064>XP_006714406 Length = 3680 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_006714405 Length = 4103 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 2134 KYIMEEHDS 2142>XP_005263349 Length = 4410 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 2441 KYIMEEHDS 2449>XP_005263348 Length = 4443 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 2474 KYIMEEHDS 2482>XP_005263347 Length = 4640 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_005263346 Length = 4983 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3014 KYIMEEHDS 3022>XP_005263345 Length = 4991 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_005263344 Length = 5005 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_005263343 Length = 5009 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3040 KYIMEEHDS 3048>XP_005263342 Length = 5025 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3056 KYIMEEHDS 3064>XP_005263341 Length = 5026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_005263340 Length = 5026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>XP_005263339 Length = 5026 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 6/9 (66%) Query: 1 KLVMESHSS 9 K +ME H S Sbjct: 3057 KYIMEEHDS 3065>NP_006436 Length = 2335 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KLVMESH 7 KLV++SH Sbjct: 555 KLVVDSH 561>NP_001073932 Length = 4314 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KLVMESH 7 +L+MESH Sbjct: 1019 ELMMESH 1025>NP_001368 Length = 4307 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KLVMESH 7 +L+MESH Sbjct: 1019 ELMMESH 1025>NP_612201 Length = 404 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMESHSS 9 ++ESHSS Sbjct: 62 LLESHSS 68>XP_006721797 Length = 362 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMESHSS 9 ++ESHSS Sbjct: 20 LLESHSS 26>XP_006721796 Length = 396 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VMESHSS 9 ++ESHSS Sbjct: 54 LLESHSS 60>XP_006718966 Length = 4300 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KLVMESH 7 +L+MESH Sbjct: 1019 ELMMESH 1025Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.300 0.107 0.254 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 565,068 Number of extensions: 688 Number of successful extensions: 31 Number of sequences better than 10000.0: 31 Number of HSP's gapped: 31 Number of HSP's successfully gapped: 31 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |