Cancertope

In silico Platform for designing genome-based
Personalized immunotherapy or Vaccine against Cancer

Blast-Search of mutated query peptide against human proteome

BLAST Search Results
BLASTP 2.2.15 [Oct-15-2006]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= User_input
         (9 letters)

Database: HUMAN_PROTEOME_FASTA 
           71,491 sequences; 45,948,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NP_055726                                                              19     869
XP_005254596                                                           17    3301
XP_005254595                                                           17    3301
XP_005254594                                                           17    3301
XP_005254593                                                           17    3301
NP_002739                                                              17    3301
NP_003187                                                              17    4312
NP_060063                                                              17    4312
NP_942595                                                              17    4312
XP_005263174                                                           17    4312
XP_006710929                                                           17    4312
XP_006710928                                                           17    4312
XP_005246037                                                           17    4312
XP_006710927                                                           17    4312
NP_001001132                                                           16    5631
NP_003015                                                              16    5631
XP_005261083                                                           16    5631
XP_005261088                                                           16    5631
XP_005261084                                                           16    5631
NP_115642                                                              16    7355
NP_002892                                                              16    7355
NP_114108                                                              16    7355
NP_071437                                                              16    7355
NP_001608                                                              16    7355
NP_001128620                                                           16    7355
NP_001128619                                                           16    7355
NP_001128618                                                           16    7355
NP_689472                                                              16    7355
NP_005890                                                              16    7355
NP_001171983                                                           16    7355
NP_114068                                                              16    7355
NP_114064                                                              16    7355
NP_112598                                                              16    7355
NP_689608                                                              16    7355
NP_001165377                                                           16    7355
NP_001165376                                                           16    7355
XP_006721966                                                           16    7355
XP_005263234                                                           16    7355
XP_005264808                                                           16    7355
XP_005264807                                                           16    7355
XP_005264806                                                           16    7355
XP_005264805                                                           16    7355
XP_005264804                                                           16    7355
NP_000857                                                              16    7355
NP_001036068                                                           15    9605
NP_055878                                                              15    9605
NP_006747                                                              15    9605
NP_116161                                                              15    9605
NP_958845                                                              15    9605
NP_057131                                                              15    9605
XP_005259229                                                           15    9605
XP_006716530                                                           15    9605
XP_005249650                                                           15    9605
XP_005249649                                                           15    9605
NP_031368                                                              15    9605
NP_848591                                                              15    9605
NP_079345                                                              15    9605
>NP_055726
          Length = 961

 Score = 18.9 bits (37), Expect =   869
 Identities = 8/9 (88%), Positives = 9/9 (100%)

Query: 1   KLTAEELLS 9
           KLTAEELL+
Sbjct: 705 KLTAEELLN 713
>XP_005254596
          Length = 721

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LTAEE LS
Sbjct: 304 RLTAEEALS 312
>XP_005254595
          Length = 721

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LTAEE LS
Sbjct: 304 RLTAEEALS 312
>XP_005254594
          Length = 721

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LTAEE LS
Sbjct: 304 RLTAEEALS 312
>XP_005254593
          Length = 721

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LTAEE LS
Sbjct: 304 RLTAEEALS 312
>NP_002739
          Length = 721

 Score = 16.9 bits (32), Expect =  3301
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LTAEE LS
Sbjct: 304 RLTAEEALS 312
>NP_003187
          Length = 348

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           K+TAEE+ S
Sbjct: 269 KMTAEEMAS 277
>NP_060063
          Length = 662

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLT EELL
Sbjct: 634 KLTEEELL 641
>NP_942595
          Length = 1161

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLT EELL
Sbjct: 634 KLTEEELL 641
>XP_005263174
          Length = 1124

 Score = 16.5 bits (31), Expect =  4312
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLT EELL
Sbjct: 634 KLTEEELL 641
>XP_006710929
          Length = 314

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           K+TAEE+ S
Sbjct: 232 KMTAEEMAS 240
>XP_006710928
          Length = 330

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           K+TAEE+ S
Sbjct: 248 KMTAEEMAS 256
>XP_005246037
          Length = 343

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           K+TAEE+ S
Sbjct: 248 KMTAEEMAS 256
>XP_006710927
          Length = 351

 Score = 16.5 bits (31), Expect =  4312
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           K+TAEE+ S
Sbjct: 269 KMTAEEMAS 277
>NP_001001132
          Length = 1220

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLTAEE +
Sbjct: 273 KLTAEEFI 280
>NP_003015
          Length = 1721

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLTAEE +
Sbjct: 273 KLTAEEFI 280
>XP_005261083
          Length = 1716

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLTAEE +
Sbjct: 273 KLTAEEFI 280
>XP_005261088
          Length = 1144

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLTAEE +
Sbjct: 273 KLTAEEFI 280
>XP_005261084
          Length = 1215

 Score = 16.2 bits (30), Expect =  5631
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLTAEE +
Sbjct: 273 KLTAEEFI 280
>NP_115642
          Length = 1984

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   KLTAEEL 7
           KLT+EEL
Sbjct: 716 KLTSEEL 722
>NP_002892
          Length = 331

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 1   KLTAEELL 8
           KLT EE+L
Sbjct: 299 KLTKEEIL 306
>NP_114108
          Length = 430

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1  KLTAEEL 7
          KLTA+EL
Sbjct: 92 KLTADEL 98
>NP_071437
          Length = 460

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  LTAEELLS 9
          LTAEE+ S
Sbjct: 75 LTAEEIFS 82
>NP_001608
          Length = 726

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TAEELLS 9
           TAEE+LS
Sbjct: 657 TAEEILS 663
>NP_001128620
          Length = 393

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  LTAEELLS 9
          LTAEE+ S
Sbjct: 8  LTAEEIFS 15
>NP_001128619
          Length = 444

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  LTAEELLS 9
          LTAEE+ S
Sbjct: 75 LTAEEIFS 82
>NP_001128618
          Length = 460

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  LTAEELLS 9
          LTAEE+ S
Sbjct: 75 LTAEEIFS 82
>NP_689472
          Length = 1910

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   KLTAEEL 7
           +LTAEEL
Sbjct: 384 RLTAEEL 390
>NP_005890
          Length = 966

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2   LTAEELLS 9
           LTA++LLS
Sbjct: 555 LTAQDLLS 562
>NP_001171983
          Length = 726

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TAEELLS 9
           TAEE+LS
Sbjct: 657 TAEEILS 663
>NP_114068
          Length = 966

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2   LTAEELLS 9
           LTA++LLS
Sbjct: 555 LTAQDLLS 562
>NP_114064
          Length = 966

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2   LTAEELLS 9
           LTA++LLS
Sbjct: 555 LTAQDLLS 562
>NP_112598
          Length = 5088

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1    KLTAEELLS 9
            ++TA ELLS
Sbjct: 2180 QITASELLS 2188
>NP_689608
          Length = 195

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LT EELL+
Sbjct: 114 RLTLEELLA 122
>NP_001165377
          Length = 227

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           +LT EELL+
Sbjct: 114 RLTLEELLA 122
>NP_001165376
          Length = 159

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 1  KLTAEELLS 9
          +LT EELL+
Sbjct: 68 RLTLEELLA 76
>XP_006721966
          Length = 896

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2   LTAEELLS 9
           LTA++LLS
Sbjct: 485 LTAQDLLS 492
>XP_005263234
          Length = 460

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 2  LTAEELLS 9
          LTAEE+ S
Sbjct: 75 LTAEEIFS 82
>XP_005264808
          Length = 366

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2  LTAEELLS 9
          LT+EELL+
Sbjct: 11 LTSEELLN 18
>XP_005264807
          Length = 366

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2  LTAEELLS 9
          LT+EELL+
Sbjct: 11 LTSEELLN 18
>XP_005264806
          Length = 366

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2  LTAEELLS 9
          LT+EELL+
Sbjct: 11 LTSEELLN 18
>XP_005264805
          Length = 366

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2  LTAEELLS 9
          LT+EELL+
Sbjct: 11 LTSEELLN 18
>XP_005264804
          Length = 366

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2  LTAEELLS 9
          LT+EELL+
Sbjct: 11 LTSEELLN 18
>NP_000857
          Length = 366

 Score = 15.8 bits (29), Expect =  7355
 Identities = 6/8 (75%), Positives = 8/8 (100%)

Query: 2  LTAEELLS 9
          LT+EELL+
Sbjct: 11 LTSEELLN 18
>NP_001036068
          Length = 1690

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   KLTAEEL 7
           KLT EEL
Sbjct: 820 KLTVEEL 826
>NP_055878
          Length = 921

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   KLTAEE 6
           KLTAEE
Sbjct: 634 KLTAEE 639
>NP_006747
          Length = 301

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           ++TAEE+ S
Sbjct: 222 RMTAEEMAS 230
>NP_116161
          Length = 646

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TAEELLS 9
           T+EELLS
Sbjct: 531 TSEELLS 537
>NP_958845
          Length = 280

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           ++TAEE+ S
Sbjct: 201 RMTAEEMAS 209
>NP_057131
          Length = 125

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 1  KLTAEEL 7
          K+TAEE+
Sbjct: 29 KITAEEM 35
>XP_005259229
          Length = 915

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/6 (100%), Positives = 6/6 (100%)

Query: 1   KLTAEE 6
           KLTAEE
Sbjct: 628 KLTAEE 633
>XP_006716530
          Length = 254

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           ++TAEE+ S
Sbjct: 175 RMTAEEMAS 183
>XP_005249650
          Length = 325

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   KLTAEEL 7
           KLT EEL
Sbjct: 294 KLTVEEL 300
>XP_005249649
          Length = 448

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   KLTAEEL 7
           KLT EEL
Sbjct: 417 KLTVEEL 423
>NP_031368
          Length = 423

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 6/7 (85%)

Query: 1   KLTAEEL 7
           KLT EEL
Sbjct: 392 KLTVEEL 398
>NP_848591
          Length = 491

 Score = 15.4 bits (28), Expect =  9605
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 1   KLTAEELLS 9
           K+T EE++S
Sbjct: 261 KITEEEVIS 269
>NP_079345
          Length = 590

 Score = 15.4 bits (28), Expect =  9605
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 3   TAEELLS 9
           T+EELLS
Sbjct: 473 TSEELLS 479
  Database: HUMAN_PROTEOME_FASTA
    Posted date:  May 26, 2014 10:46 AM
  Number of letters in database: 45,948,801
  Number of sequences in database:  71,491
  
Lambda     K      H
   0.298    0.118    0.259 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 71491
Number of Hits to DB: 480,363
Number of extensions: 960
Number of successful extensions: 57
Number of sequences better than 10000.0: 57
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 57
Length of query: 9
Length of database: 45,948,801
Length adjustment: 0
Effective length of query: 9
Effective length of database: 45,948,801
Effective search space: 413539209
Effective search space used: 413539209
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 28 (15.1 bits)
S2: 28 (15.4 bits)

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