Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_006715 20 509 NP_005913 20 509 XP_005267046 20 509 XP_005267045 20 509 NP_078863 16 7355 NP_001245221 16 7355 NP_001129493 16 7355 NP_001363 16 7355 XP_006721530 16 7355 XP_006721529 16 7355 XP_006721528 16 7355 XP_005271253 16 7355 XP_005271252 16 7355 XP_005271251 16 7355 NP_055032 15 9605 NP_078988 15 9605 NP_001017425 15 9605 NP_001017424 15 9605>NP_006715 Length = 1558 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KLRIMGTVV 9 KLRIMGTV+ Sbjct: 406 KLRIMGTVL 414>NP_005913 Length = 1608 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KLRIMGTVV 9 KLRIMGTV+ Sbjct: 406 KLRIMGTVL 414>XP_005267046 Length = 1554 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KLRIMGTVV 9 KLRIMGTV+ Sbjct: 406 KLRIMGTVL 414>XP_005267045 Length = 1604 Score = 19.6 bits (39), Expect = 509 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KLRIMGTVV 9 KLRIMGTV+ Sbjct: 406 KLRIMGTVL 414>NP_078863 Length = 277 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KLRIMGTV 8 +LR++GT+ Sbjct: 134 RLRVVGTI 141>NP_001245221 Length = 905 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LRIMGTV 8 LRIMG+V Sbjct: 15 LRIMGSV 21>NP_001129493 Length = 901 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LRIMGTV 8 LRIMG+V Sbjct: 15 LRIMGSV 21>NP_001363 Length = 4486 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 +LR++GT V Sbjct: 24 RLRLLGTYV 32>XP_006721530 Length = 2746 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 +LR++GT V Sbjct: 24 RLRLLGTYV 32>XP_006721529 Length = 2817 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 +LR++GT V Sbjct: 24 RLRLLGTYV 32>XP_006721528 Length = 3869 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 +LR++GT V Sbjct: 24 RLRLLGTYV 32>XP_005271253 Length = 204 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KLRIMGTV 8 +LR++GT+ Sbjct: 61 RLRVVGTI 68>XP_005271252 Length = 246 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KLRIMGTV 8 +LR++GT+ Sbjct: 103 RLRVVGTI 110>XP_005271251 Length = 247 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KLRIMGTV 8 +LR++GT+ Sbjct: 104 RLRVVGTI 111>NP_055032 Length = 411 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 K+RI+ T++ Sbjct: 205 KIRIISTII 213>NP_078988 Length = 773 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LRIMGTVV 9 L+I+GT++ Sbjct: 179 LQILGTII 186>NP_001017425 Length = 426 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 K+RI+ T++ Sbjct: 220 KIRIISTII 228>NP_001017424 Length = 422 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 KLRIMGTVV 9 K+RI+ T++ Sbjct: 216 KIRIISTII 224Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.148 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 368,716 Number of extensions: 468 Number of successful extensions: 18 Number of sequences better than 10000.0: 18 Number of HSP's gapped: 18 Number of HSP's successfully gapped: 18 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |