Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_008835 18 1482 NP_001075109 18 1482 NP_057531 18 1935 XP_005249832 18 1935 XP_006715803 18 1935 XP_006715802 18 1935 XP_006715801 18 1935 NP_000360 17 2528 XP_005268094 17 2528 NP_060485 17 3301 NP_001171711 17 3301 NP_852111 17 4312 NP_000136 17 4312 NP_001167554 17 4312 NP_001167553 17 4312 NP_060322 17 4312 NP_001167552 17 4312 NP_008880 16 5631 NP_001258963 16 5631 NP_001120868 16 5631 XP_006722914 16 5631 NP_001087199 16 5631 NP_001127923 16 7355 NP_001127922 16 7355 NP_690877 16 7355 NP_002842 16 7355 NP_001193767 16 7355 XP_006716139 16 7355 XP_005250576 16 7355 NP_001193768 16 7355 NP_001128302 15 9605 NP_060121 15 9605 NP_001128303 15 9605 NP_001128304 15 9605 NP_001156909 15 9605 NP_149106 15 9605 NP_001156908 15 9605 NP_001277697 15 9605 NP_001156907 15 9605 NP_071431 15 9605 NP_000048 15 9605 NP_001274177 15 9605 NP_001274176 15 9605 NP_001274175 15 9605 NP_653259 15 9605 XP_005262426 15 9605 XP_005262425 15 9605 XP_006720695 15 9605 XP_005267096 15 9605 XP_006715570 15 9605>NP_008835 Length = 4128 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLL ITVRN Sbjct: 668 KLLSITVRN 676>NP_001075109 Length = 4097 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLL ITVRN Sbjct: 668 KLLSITVRN 676>NP_057531 Length = 540 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 K++Y+T RN Sbjct: 308 KMMYLTTRN 316>XP_005249832 Length = 428 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 K++Y+T RN Sbjct: 196 KMMYLTTRN 204>XP_006715803 Length = 540 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 K++Y+T RN Sbjct: 308 KMMYLTTRN 316>XP_006715802 Length = 540 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 K++Y+T RN Sbjct: 308 KMMYLTTRN 316>XP_006715801 Length = 540 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 K++Y+T RN Sbjct: 308 KMMYLTTRN 316>NP_000360 Length = 764 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LYITVRN 9 +YITVRN Sbjct: 604 IYITVRN 610>XP_005268094 Length = 764 Score = 17.3 bits (33), Expect = 2528 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 LYITVRN 9 +YITVRN Sbjct: 604 IYITVRN 610>NP_060485 Length = 855 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLLY+T N Sbjct: 454 KLLYLTTTN 462>NP_001171711 Length = 758 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLLY+T N Sbjct: 454 KLLYLTTTN 462>NP_852111 Length = 669 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LYITVRN 9 +Y+TVRN Sbjct: 526 IYLTVRN 532>NP_000136 Length = 695 Score = 16.5 bits (31), Expect = 4312 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 LYITVRN 9 +Y+TVRN Sbjct: 552 IYLTVRN 558>NP_001167554 Length = 1039 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLLY T+R+ Sbjct: 806 KLLYTTLRH 814>NP_001167553 Length = 1040 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLLY T+R+ Sbjct: 807 KLLYTTLRH 815>NP_060322 Length = 1062 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLLY T+R+ Sbjct: 829 KLLYTTLRH 837>NP_001167552 Length = 1062 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLLY T+R+ Sbjct: 829 KLLYTTLRH 837>NP_008880 Length = 593 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLYI +RN Sbjct: 408 LLYILLRN 415>NP_001258963 Length = 604 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLYI +RN Sbjct: 419 LLYILLRN 426>NP_001120868 Length = 590 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLYI +RN Sbjct: 405 LLYILLRN 412>XP_006722914 Length = 566 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLYI +RN Sbjct: 381 LLYILLRN 388>NP_001087199 Length = 578 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLYITVRN 9 KLL+ T+RN Sbjct: 285 KLLFRTLRN 293>NP_001127923 Length = 321 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LLYITVRN 9 ++Y+T+RN Sbjct: 255 IMYMTLRN 262>NP_001127922 Length = 435 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LLYITVRN 9 ++Y+T+RN Sbjct: 357 IMYMTLRN 364>NP_690877 Length = 423 Score = 15.8 bits (29), Expect = 7355 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 LLYITVRN 9 ++Y+T+RN Sbjct: 357 IMYMTLRN 364>NP_002842 Length = 2315 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LLYITVRN 9 L Y TVRN Sbjct: 1862 LAYYTVRN 1869>NP_001193767 Length = 1455 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LLYITVRN 9 L Y TVRN Sbjct: 1002 LAYYTVRN 1009>XP_006716139 Length = 1869 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LLYITVRN 9 L Y TVRN Sbjct: 1416 LAYYTVRN 1423>XP_005250576 Length = 2308 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LLYITVRN 9 L Y TVRN Sbjct: 1855 LAYYTVRN 1862>NP_001193768 Length = 1448 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 LLYITVRN 9 L Y TVRN Sbjct: 995 LAYYTVRN 1002>NP_001128302 Length = 1196 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LYITVR 8 LY+TVR Sbjct: 530 LYVTVR 535>NP_060121 Length = 1196 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LYITVR 8 LY+TVR Sbjct: 530 LYVTVR 535>NP_001128303 Length = 1196 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LYITVR 8 LY+TVR Sbjct: 530 LYVTVR 535>NP_001128304 Length = 1053 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LYITVR 8 LY+TVR Sbjct: 530 LYVTVR 535>NP_001156909 Length = 854 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLL + +RN Sbjct: 754 KLLVVDIRN 762>NP_149106 Length = 830 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLL + +RN Sbjct: 730 KLLVVDIRN 738>NP_001156908 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLL + +RN Sbjct: 793 KLLVVDIRN 801>NP_001277697 Length = 721 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLL + +RN Sbjct: 621 KLLVVDIRN 629>NP_001156907 Length = 893 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KLLYITVRN 9 KLL + +RN Sbjct: 793 KLLVVDIRN 801>NP_071431 Length = 371 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 +LY ++RN Sbjct: 94 ILYFSIRN 101>NP_000048 Length = 1417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KLLYIT 6 KLLY+T Sbjct: 761 KLLYVT 766>NP_001274177 Length = 1042 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KLLYIT 6 KLLY+T Sbjct: 386 KLLYVT 391>NP_001274176 Length = 1286 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KLLYIT 6 KLLY+T Sbjct: 761 KLLYVT 766>NP_001274175 Length = 1417 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KLLYIT 6 KLLY+T Sbjct: 761 KLLYVT 766>NP_653259 Length = 2073 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLY+ +RN Sbjct: 1504 LLYLLMRN 1511>XP_005262426 Length = 2055 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLY+ +RN Sbjct: 1486 LLYLLMRN 1493>XP_005262425 Length = 2086 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 LLYITVRN 9 LLY+ +RN Sbjct: 1517 LLYLLMRN 1524>XP_006720695 Length = 763 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KLLYIT 6 KLLY+T Sbjct: 107 KLLYVT 112>XP_005267096 Length = 1168 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LYITVR 8 LY+TVR Sbjct: 530 LYVTVR 535>XP_006715570 Length = 1179 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 3 LYITVR 8 LY+TVR Sbjct: 530 LYVTVR 535Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.332 0.147 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 388,519 Number of extensions: 647 Number of successful extensions: 50 Number of sequences better than 10000.0: 50 Number of HSP's gapped: 50 Number of HSP's successfully gapped: 50 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |