Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001245210 18 1135 NP_000242 18 1135 XP_005264389 18 1135 NP_000631 17 3301 NP_694996 17 4312 NP_001265227 17 4312 NP_848634 16 5631 XP_006723231 16 5631 XP_005258877 16 5631 XP_005258876 16 5631 XP_006719433 16 5631 NP_054756 16 5631 NP_001074924 16 7355 NP_066580 16 7355 NP_060474 16 7355 NP_001157932 16 7355 XP_005253535 16 7355 XP_005253534 16 7355 XP_005253531 16 7355 XP_006713895 16 7355 XP_005247980 16 7355 XP_005247979 16 7355 XP_005247978 16 7355 XP_005247626 16 7355 XP_005247625 16 7355 NP_602307 16 7355 NP_055694 16 7355 NP_877435 15 9605 XP_005249642 15 9605 XP_005249641 15 9605 NP_066939 15 9605 NP_001005323 15 9605 NP_001028191 15 9605>NP_001245210 Length = 868 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLLLVVFVT 9 KLLL VFVT Sbjct: 364 KLLLAVFVT 372>NP_000242 Length = 934 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLLLVVFVT 9 KLLL VFVT Sbjct: 430 KLLLAVFVT 438>XP_005264389 Length = 921 Score = 18.5 bits (36), Expect = 1135 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KLLLVVFVT 9 KLLL VFVT Sbjct: 430 KLLLAVFVT 438>NP_000631 Length = 380 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 L+LV+FVT Sbjct: 352 LILVIFVT 359>NP_694996 Length = 2526 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KLLLVVFV 8 K+LL++FV Sbjct: 2 KILLIIFV 9>NP_001265227 Length = 2614 Score = 16.5 bits (31), Expect = 4312 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KLLLVVFV 8 K+LL++FV Sbjct: 2 KILLIIFV 9>NP_848634 Length = 131 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KLLLVVFV 8 KLL+++F+ Sbjct: 13 KLLIIIFI 20>XP_006723231 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 +LL++FVT Sbjct: 621 VLLIIFVT 628>XP_005258877 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 +LL++FVT Sbjct: 621 VLLIIFVT 628>XP_005258876 Length = 818 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 +LL++FVT Sbjct: 703 VLLIIFVT 710>XP_006719433 Length = 131 Score = 16.2 bits (30), Expect = 5631 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 KLLLVVFV 8 KLL+++F+ Sbjct: 13 KLLIIIFI 20>NP_054756 Length = 736 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 +LL++FVT Sbjct: 621 VLLIIFVT 628>NP_001074924 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLVVFVT 9 LLL+VF T Sbjct: 200 LLLIVFYT 207>NP_066580 Length = 670 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 LLL++FV+ Sbjct: 70 LLLIIFVS 77>NP_060474 Length = 275 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 L+LVVF+T Sbjct: 156 LVLVVFLT 163>NP_001157932 Length = 342 Score = 15.8 bits (29), Expect = 7355 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KLLLVVF 7 KLLL++F Sbjct: 334 KLLLIIF 340>XP_005253535 Length = 579 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 LLL++FV+ Sbjct: 68 LLLIIFVS 75>XP_005253534 Length = 650 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 LLL++FV+ Sbjct: 50 LLLIIFVS 57>XP_005253531 Length = 670 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 LLL++FV+ Sbjct: 70 LLLIIFVS 77>XP_006713895 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLVVFVT 9 LLL+VF T Sbjct: 200 LLLIVFYT 207>XP_005247980 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLVVFVT 9 LLL+VF T Sbjct: 200 LLLIVFYT 207>XP_005247979 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLVVFVT 9 LLL+VF T Sbjct: 200 LLLIVFYT 207>XP_005247978 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLVVFVT 9 LLL+VF T Sbjct: 200 LLLIVFYT 207>XP_005247626 Length = 291 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 L+LVVF+T Sbjct: 172 LVLVVFLT 179>XP_005247625 Length = 291 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 L+LVVF+T Sbjct: 172 LVLVVFLT 179>NP_602307 Length = 670 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 LLLVVFVT 9 LLL++FV+ Sbjct: 70 LLLIIFVS 77>NP_055694 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 LLLVVFVT 9 LLL+VF T Sbjct: 200 LLLIVFYT 207>NP_877435 Length = 1102 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KLLLVVF 7 +LLLVVF Sbjct: 226 RLLLVVF 232>XP_005249642 Length = 563 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLLVVFVT 9 +LLLV FV+ Sbjct: 165 QLLLVTFVS 173>XP_005249641 Length = 979 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLLVVFVT 9 +LLLV FV+ Sbjct: 165 QLLLVTFVS 173>NP_066939 Length = 1119 Score = 15.4 bits (28), Expect = 9605 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KLLLVVFVT 9 +LLLV FV+ Sbjct: 165 QLLLVTFVS 173>NP_001005323 Length = 309 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 LLLVVFV 8 +LLVVFV Sbjct: 197 MLLVVFV 203>NP_001028191 Length = 66 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KLLLVVFV 8 K LLVVFV Sbjct: 2 KPLLVVFV 9Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.348 0.160 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 321,760 Number of extensions: 537 Number of successful extensions: 33 Number of sequences better than 10000.0: 33 Number of HSP's gapped: 33 Number of HSP's successfully gapped: 33 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.7 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |