Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_055876 19 869 XP_006716804 19 869 NP_055626 18 1935 XP_006717405 18 1935 XP_006717404 18 1935 XP_006717403 18 1935 XP_005263469 18 1935 XP_005263468 18 1935 NP_001128668 17 4312 XP_006717666 17 4312 XP_005269535 17 4312 XP_006717665 17 4312 XP_005269533 17 4312 XP_005269534 17 4312 NP_001159579 15 9605 NP_005509 15 9605 NP_201586 15 9605>NP_055876 Length = 1056 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KARFSTAS Sbjct: 995 KARFSTAS 1002>XP_006716804 Length = 1089 Score = 18.9 bits (37), Expect = 869 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KARFSTAS Sbjct: 1028 KARFSTAS 1035>NP_055626 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KKARFSTA 8 KK RFSTA Sbjct: 720 KKVRFSTA 727>XP_006717405 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KKARFSTA 8 KK RFSTA Sbjct: 720 KKVRFSTA 727>XP_006717404 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KKARFSTA 8 KK RFSTA Sbjct: 720 KKVRFSTA 727>XP_006717403 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KKARFSTA 8 KK RFSTA Sbjct: 720 KKVRFSTA 727>XP_005263469 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KKARFSTA 8 KK RFSTA Sbjct: 720 KKVRFSTA 727>XP_005263468 Length = 1209 Score = 17.7 bits (34), Expect = 1935 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KKARFSTA 8 KK RFSTA Sbjct: 720 KKVRFSTA 727>NP_001128668 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KA+FST+S Sbjct: 725 KAKFSTSS 732>XP_006717666 Length = 1289 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KA+FST+S Sbjct: 579 KAKFSTSS 586>XP_005269535 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KA+FST+S Sbjct: 725 KAKFSTSS 732>XP_006717665 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KA+FST+S Sbjct: 725 KAKFSTSS 732>XP_005269533 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KA+FST+S Sbjct: 725 KAKFSTSS 732>XP_005269534 Length = 1435 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 KARFSTAS 9 KA+FST+S Sbjct: 725 KAKFSTSS 732>NP_001159579 Length = 466 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RFSTAS 9 RFSTAS Sbjct: 35 RFSTAS 40>NP_005509 Length = 508 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RFSTAS 9 RFSTAS Sbjct: 35 RFSTAS 40>NP_201586 Length = 477 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 RFSTAS 9 RFSTAS Sbjct: 21 RFSTAS 26Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.107 0.255 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 288,112 Number of extensions: 252 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |