Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_115803 19 665 NP_001005489 17 4312 NP_077306 16 5631 XP_005276791 16 5631 XP_005244909 16 5631 NP_001010860 16 7355 NP_001182180 15 9605 NP_778239 15 9605 NP_001182181 15 9605 NP_001128527 15 9605 NP_001244957 15 9605 NP_001055 15 9605 NP_004059 15 9605 NP_001020376 15 9605 NP_001182183 15 9605 NP_001182178 15 9605 NP_778243 15 9605 NP_001182179 15 9605 NP_001182177 15 9605 XP_006716855 15 9605 XP_006716854 15 9605 XP_006713382 15 9605 NP_001088 15 9605>NP_115803 Length = 1156 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KIVIKSKYS 9 KIVIKS+YS Sbjct: 361 KIVIKSEYS 369>NP_001005489 Length = 314 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KIVIKSKYS 9 K+V K+KYS Sbjct: 301 KVVEKAKYS 309>NP_077306 Length = 730 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 IVIKSKYS 9 +V+KSK+S Sbjct: 396 VVLKSKFS 403>XP_005276791 Length = 490 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 IVIKSKYS 9 +V+KSK+S Sbjct: 156 VVLKSKFS 163>XP_005244909 Length = 490 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 IVIKSKYS 9 +V+KSK+S Sbjct: 156 VVLKSKFS 163>NP_001010860 Length = 674 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 4 IKSKYS 9 IKSKYS Sbjct: 428 IKSKYS 433>NP_001182180 Length = 292 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 189 VVIKDKY 195>NP_778239 Length = 306 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 203 VVIKDKY 209>NP_001182181 Length = 284 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 131 VVIKDKY 137>NP_001128527 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KIVIKSK 7 K+V+KSK Sbjct: 493 KVVLKSK 499>NP_001244957 Length = 631 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KIVIKSK 7 K+V+KSK Sbjct: 501 KVVLKSK 507>NP_001055 Length = 623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KIVIKSK 7 K+V+KSK Sbjct: 493 KVVLKSK 499>NP_004059 Length = 435 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KIVIKSKY 8 K+VIKS + Sbjct: 304 KVVIKSNF 311>NP_001020376 Length = 433 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 KIVIKSKY 8 K+VIKS + Sbjct: 302 KVVIKSNF 309>NP_001182183 Length = 288 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 135 VVIKDKY 141>NP_001182178 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 189 VVIKDKY 195>NP_778243 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 189 VVIKDKY 195>NP_001182179 Length = 302 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 149 VVIKDKY 155>NP_001182177 Length = 356 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 203 VVIKDKY 209>XP_006716855 Length = 254 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 101 VVIKDKY 107>XP_006716854 Length = 342 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 IVIKSKY 8 +VIK KY Sbjct: 189 VVIKDKY 195>XP_006713382 Length = 630 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KIVIKSK 7 K+V+KSK Sbjct: 493 KVVLKSK 499>NP_001088 Length = 421 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KIVIKSKYS 9 KI+I KY+ Sbjct: 127 KIIIHEKYN 135Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.128 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 401,890 Number of extensions: 481 Number of successful extensions: 23 Number of sequences better than 10000.0: 23 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 23 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |