Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_036462 17 2528 NP_001243397 17 2528 XP_005269721 17 2528 NP_055891 16 5631 XP_005266929 16 5631 XP_005266928 16 5631 XP_005266927 16 5631 XP_006715465 16 5631 NP_000159 16 7355 NP_001020279 16 7355 NP_001640 16 7355 NP_002276 16 7355 XP_005274557 16 7355 XP_005249761 16 7355 XP_005249760 16 7355 XP_005264002 16 7355 XP_005264000 16 7355 XP_006712586 16 7355 XP_005263999 16 7355 NP_005889 16 7355 NP_976240 16 7355 NP_004689 15 9605 NP_710162 15 9605 NP_001161842 15 9605 NP_004738 15 9605 XP_006725185 15 9605 XP_006725184 15 9605 XP_006725183 15 9605 XP_006718119 15 9605 XP_006718118 15 9605 XP_005270333 15 9605 XP_005249560 15 9605>NP_036462 Length = 2073 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KHSSSRLAV 9 K SSSRLAV Sbjct: 393 KDSSSRLAV 401>NP_001243397 Length = 1890 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KHSSSRLAV 9 K SSSRLAV Sbjct: 393 KDSSSRLAV 401>XP_005269721 Length = 2073 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KHSSSRLAV 9 K SSSRLAV Sbjct: 393 KDSSSRLAV 401>NP_055891 Length = 502 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KHSSSRL 7 +HSSSRL Sbjct: 459 QHSSSRL 465>XP_005266929 Length = 329 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KHSSSRL 7 +HSSSRL Sbjct: 286 QHSSSRL 292>XP_005266928 Length = 378 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KHSSSRL 7 +HSSSRL Sbjct: 335 QHSSSRL 341>XP_005266927 Length = 418 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KHSSSRL 7 +HSSSRL Sbjct: 375 QHSSSRL 381>XP_006715465 Length = 442 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 1 KHSSSRL 7 +HSSSRL Sbjct: 399 QHSSSRL 405>NP_000159 Length = 1580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 HSSSRL 7 HSSSRL Sbjct: 1533 HSSSRL 1538>NP_001020279 Length = 1251 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSRLA Sbjct: 864 KDSSSRLA 871>NP_001640 Length = 1616 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HSSSRLAV 9 H SSRL+V Sbjct: 183 HPSSRLSV 190>NP_002276 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSRLA Sbjct: 839 KDSSSRLA 846>XP_005274557 Length = 1615 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 HSSSRLAV 9 H SSRL+V Sbjct: 183 HPSSRLSV 190>XP_005249761 Length = 1580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 HSSSRL 7 HSSSRL Sbjct: 1533 HSSSRL 1538>XP_005249760 Length = 1580 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 HSSSRL 7 HSSSRL Sbjct: 1533 HSSSRL 1538>XP_005264002 Length = 895 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSRLA Sbjct: 508 KDSSSRLA 515>XP_005264000 Length = 1226 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSRLA Sbjct: 839 KDSSSRLA 846>XP_006712586 Length = 1262 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSRLA Sbjct: 891 KDSSSRLA 898>XP_005263999 Length = 1278 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSRLA Sbjct: 891 KDSSSRLA 898>NP_005889 Length = 709 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HSSSRLA 8 HS SRLA Sbjct: 412 HSESRLA 418>NP_976240 Length = 694 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HSSSRLA 8 HS SRLA Sbjct: 412 HSESRLA 418>NP_004689 Length = 683 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 HSSSRLAV 9 H+S+RLA+ Sbjct: 365 HTSTRLAL 372>NP_710162 Length = 350 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 KHSSSRL 7 +HSSSR+ Sbjct: 161 EHSSSRI 167>NP_001161842 Length = 1782 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KHSSSRLAV 9 +H+ SRL+V Sbjct: 34 RHAPSRLSV 42>NP_004738 Length = 1919 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1483 KQSSSRIA 1490>XP_006725185 Length = 1579 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1143 KQSSSRIA 1150>XP_006725184 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1471 KQSSSRIA 1478>XP_006725183 Length = 1915 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1479 KQSSSRIA 1486>XP_006718119 Length = 1579 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1143 KQSSSRIA 1150>XP_006718118 Length = 1907 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1471 KQSSSRIA 1478>XP_005270333 Length = 1915 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KHSSSRLA 8 K SSSR+A Sbjct: 1479 KQSSSRIA 1486>XP_005249560 Length = 1750 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KHSSSRLAV 9 +H+ SRL+V Sbjct: 34 RHAPSRLSV 42Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.110 0.267 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 464,533 Number of extensions: 456 Number of successful extensions: 32 Number of sequences better than 10000.0: 32 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 32 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.6 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |