Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001077059 18 1135 XP_005264440 18 1135 XP_006712099 18 1135 XP_005264439 18 1135 XP_005264438 18 1135 NP_060197 18 1135 NP_004110 18 1482 NP_002323 17 2528 NP_005831 16 7355 XP_005274857 16 7355 XP_005274700 16 7355 XP_005274699 16 7355 NP_000072 15 9605 NP_065194 15 9605 NP_001008 15 9605 NP_001276018 15 9605 NP_079048 15 9605 NP_001276019 15 9605 NP_001276017 15 9605 NP_001276020 15 9605 NP_001235 15 9605 NP_078896 15 9605 XP_006723447 15 9605 XP_006723446 15 9605 XP_006723445 15 9605 XP_006723444 15 9605 XP_006717388 15 9605 XP_005273087 15 9605 XP_006711794 15 9605 XP_005273086 15 9605 XP_005273085 15 9605 XP_005273084 15 9605 XP_005271279 15 9605 XP_005271277 15 9605 XP_005271276 15 9605 XP_005271275 15 9605 XP_005271273 15 9605>NP_001077059 Length = 644 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KHLSQSALV 9 KHLSQS+L+ Sbjct: 364 KHLSQSSLL 372>XP_005264440 Length = 352 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KHLSQSALV 9 KHLSQS+L+ Sbjct: 72 KHLSQSSLL 80>XP_006712099 Length = 708 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KHLSQSALV 9 KHLSQS+L+ Sbjct: 428 KHLSQSSLL 436>XP_005264439 Length = 715 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KHLSQSALV 9 KHLSQS+L+ Sbjct: 435 KHLSQSSLL 443>XP_005264438 Length = 753 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KHLSQSALV 9 KHLSQS+L+ Sbjct: 473 KHLSQSSLL 481>NP_060197 Length = 689 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 KHLSQSALV 9 KHLSQS+L+ Sbjct: 409 KHLSQSSLL 417>NP_004110 Length = 993 Score = 18.1 bits (35), Expect = 1482 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 KHLSQSALV 9 KH SQSALV Sbjct: 334 KHPSQSALV 342>NP_002323 Length = 4544 Score = 17.3 bits (33), Expect = 2528 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 2 HLSQSAL 8 HLSQSAL Sbjct: 1305 HLSQSAL 1311>NP_005831 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KHLSQSAL 8 +HLSQS++ Sbjct: 77 QHLSQSSI 84>XP_005274857 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KHLSQSAL 8 +HLSQS++ Sbjct: 77 QHLSQSSI 84>XP_005274700 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KHLSQSAL 8 +HLSQS++ Sbjct: 77 QHLSQSSI 84>XP_005274699 Length = 288 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KHLSQSAL 8 +HLSQS++ Sbjct: 77 QHLSQSSI 84>NP_000072 Length = 3801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HLSQSALV 9 HLSQS ++ Sbjct: 1145 HLSQSKVI 1152>NP_065194 Length = 1819 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HLSQSAL 8 H SQSAL Sbjct: 1300 HTSQSAL 1306>NP_001008 Length = 151 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KHLSQSAL 8 K LSQSAL Sbjct: 9 KGLSQSAL 16>NP_001276018 Length = 1123 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 783 KHISQS 788>NP_079048 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 802 KHISQS 807>NP_001276019 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 802 KHISQS 807>NP_001276017 Length = 1142 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 802 KHISQS 807>NP_001276020 Length = 782 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 442 KHISQS 447>NP_001235 Length = 234 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KHLSQSALV 9 KH+ + ALV Sbjct: 166 KHIKKQALV 174>NP_078896 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HLSQSAL 8 HL QSAL Sbjct: 46 HLRQSAL 52>XP_006723447 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HLSQSAL 8 HL QSAL Sbjct: 46 HLRQSAL 52>XP_006723446 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HLSQSAL 8 HL QSAL Sbjct: 46 HLRQSAL 52>XP_006723445 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HLSQSAL 8 HL QSAL Sbjct: 46 HLRQSAL 52>XP_006723444 Length = 541 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 2 HLSQSAL 8 HL QSAL Sbjct: 46 HLRQSAL 52>XP_006717388 Length = 170 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 KHLSQSALV 9 KH+ + ALV Sbjct: 102 KHIKKQALV 110>XP_005273087 Length = 2788 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HLSQSALV 9 HLSQS ++ Sbjct: 1145 HLSQSKVI 1152>XP_006711794 Length = 3022 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HLSQSALV 9 HLSQS ++ Sbjct: 366 HLSQSKVI 373>XP_005273086 Length = 3264 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HLSQSALV 9 HLSQS ++ Sbjct: 1145 HLSQSKVI 1152>XP_005273085 Length = 3755 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HLSQSALV 9 HLSQS ++ Sbjct: 1145 HLSQSKVI 1152>XP_005273084 Length = 3801 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 HLSQSALV 9 HLSQS ++ Sbjct: 1145 HLSQSKVI 1152>XP_005271279 Length = 782 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 442 KHISQS 447>XP_005271277 Length = 951 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 611 KHISQS 616>XP_005271276 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 727 KHISQS 732>XP_005271275 Length = 1067 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 727 KHISQS 732>XP_005271273 Length = 1130 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KHLSQS 6 KH+SQS Sbjct: 790 KHISQS 795Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.312 0.117 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 409,410 Number of extensions: 301 Number of successful extensions: 37 Number of sequences better than 10000.0: 37 Number of HSP's gapped: 37 Number of HSP's successfully gapped: 37 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |