Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_722576 19 665 XP_005262424 19 665 NP_001239155 17 3301 NP_006613 17 3301 NP_060720 17 3301 NP_054868 17 3301 XP_005273625 17 3301 XP_006716420 17 3301 XP_006716419 17 3301 XP_005250342 17 3301 NP_001138631 17 3301 NP_001026862 17 4312 NP_005815 17 4312 XP_005250165 17 4312 XP_006724713 16 5631 XP_006724712 16 5631 XP_006724711 16 5631 NP_001155963 16 5631 XP_006726471 16 7355 XP_006710212 16 7355 NP_001185708 15 9605 NP_003582 15 9605 NP_001185707 15 9605 NP_001185706 15 9605>NP_722576 Length = 3080 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KFKLTTLLL 9 +FKLTTLLL Sbjct: 753 EFKLTTLLL 761>XP_005262424 Length = 2875 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 KFKLTTLLL 9 +FKLTTLLL Sbjct: 548 EFKLTTLLL 556>NP_001239155 Length = 671 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FKLTTLLL 9 F+LTTLL+ Sbjct: 641 FRLTTLLM 648>NP_006613 Length = 685 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 FKLTTLLL 9 F+LTTLL+ Sbjct: 655 FRLTTLLM 662>NP_060720 Length = 658 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 KFK TT++L Sbjct: 18 KFKSTTIML 26>NP_054868 Length = 747 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KFKLTTLL 8 K KLTTLL Sbjct: 736 KIKLTTLL 743>XP_005273625 Length = 427 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 KFK TT++L Sbjct: 18 KFKSTTIML 26>XP_006716420 Length = 646 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 KFK TT++L Sbjct: 18 KFKSTTIML 26>XP_006716419 Length = 676 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 KFK TT++L Sbjct: 18 KFKSTTIML 26>XP_005250342 Length = 773 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KFKLTTLL 8 K KLTTLL Sbjct: 762 KIKLTTLL 769>NP_001138631 Length = 637 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 KFK TT++L Sbjct: 18 KFKSTTIML 26>NP_001026862 Length = 441 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KLTTLLL 9 KLTTLLL Sbjct: 130 KLTTLLL 136>NP_005815 Length = 313 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KLTTLLL 9 KLTTLLL Sbjct: 130 KLTTLLL 136>XP_005250165 Length = 441 Score = 16.5 bits (31), Expect = 4312 Identities = 7/7 (100%), Positives = 7/7 (100%) Query: 3 KLTTLLL 9 KLTTLLL Sbjct: 130 KLTTLLL 136>XP_006724713 Length = 238 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 K +LTTLLL Sbjct: 2 KSELTTLLL 10>XP_006724712 Length = 250 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 K +LTTLLL Sbjct: 54 KSELTTLLL 62>XP_006724711 Length = 290 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 K +LTTLLL Sbjct: 54 KSELTTLLL 62>NP_001155963 Length = 256 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KFKLTTLLL 9 K +LTTLLL Sbjct: 54 KSELTTLLL 62>XP_006726471 Length = 249 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KFKLTTLL 8 +FK++TLL Sbjct: 15 RFKISTLL 22>XP_006710212 Length = 249 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 KFKLTTLL 8 +FK++TLL Sbjct: 15 RFKISTLL 22>NP_001185708 Length = 758 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KFKLTT 6 KFK+TT Sbjct: 663 KFKITT 668>NP_003582 Length = 745 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KFKLTT 6 KFK+TT Sbjct: 650 KFKITT 655>NP_001185707 Length = 764 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KFKLTT 6 KFK+TT Sbjct: 669 KFKITT 674>NP_001185706 Length = 745 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 1 KFKLTT 6 KFK+TT Sbjct: 650 KFKITT 655Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.149 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 312,922 Number of extensions: 356 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.3 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |