Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_004809 16 5631 XP_006726657 16 5631 XP_006725285 16 5631 NP_060854 15 9605 NP_064627 15 9605 NP_001265166 15 9605 NP_001186506 15 9605 NP_055069 15 9605 XP_006719258 15 9605 XP_005268620 15 9605 XP_005268619 15 9605 XP_006713328 15 9605 XP_006713327 15 9605 XP_006713326 15 9605 XP_006713325 15 9605 XP_006713324 15 9605 XP_005265385 15 9605>NP_004809 Length = 820 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 1 KELLAVLE 8 K+LLA+LE Sbjct: 653 KKLLAILE 660>XP_006726657 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KELLAVLEM 9 KE+L +LEM Sbjct: 317 KEMLELLEM 325>XP_006725285 Length = 633 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 KELLAVLEM 9 KE+L +LEM Sbjct: 317 KEMLELLEM 325>NP_060854 Length = 307 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ELLAVLE 8 ELLAV+E Sbjct: 202 ELLAVIE 208>NP_064627 Length = 1388 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 929 KEILKVLE 936>NP_001265166 Length = 183 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KEL AVLE Sbjct: 130 KELPAVLE 137>NP_001186506 Length = 511 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 2 ELLAVLE 8 ELLAV+E Sbjct: 406 ELLAVIE 412>NP_055069 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KEL AVLE Sbjct: 390 KELPAVLE 397>XP_006719258 Length = 183 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KEL AVLE Sbjct: 130 KELPAVLE 137>XP_005268620 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KEL AVLE Sbjct: 287 KELPAVLE 294>XP_005268619 Length = 340 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KEL AVLE Sbjct: 287 KELPAVLE 294>XP_006713328 Length = 992 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 929 KEILKVLE 936>XP_006713327 Length = 1023 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 564 KEILKVLE 571>XP_006713326 Length = 1037 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 929 KEILKVLE 936>XP_006713325 Length = 1195 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 929 KEILKVLE 936>XP_006713324 Length = 1285 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 929 KEILKVLE 936>XP_005265385 Length = 1291 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 KELLAVLE 8 KE+L VLE Sbjct: 832 KEILKVLE 839Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.320 0.136 0.310 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 389,182 Number of extensions: 819 Number of successful extensions: 17 Number of sequences better than 10000.0: 17 Number of HSP's gapped: 17 Number of HSP's successfully gapped: 17 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |