Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001273171 17 4312 NP_004110 17 4312 NP_001511 17 4312 NP_055999 16 5631 NP_001137854 16 5631 NP_777582 16 5631 XP_006724043 16 5631 XP_006720079 16 5631 XP_006716590 16 5631 XP_006716589 16 5631 XP_006713136 16 5631 NP_001139586 16 5631 NP_004398 16 7355 NP_001073380 16 7355 NP_005202 15 9605 NP_000213 15 9605 NP_001087241 15 9605 NP_001275634 15 9605 XP_005265799 15 9605 XP_005265798 15 9605 XP_005265797 15 9605>NP_001273171 Length = 2084 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVRGNSRL 9 + RGNSRL Sbjct: 1168 SARGNSRL 1175>NP_004110 Length = 993 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 VRGN+RL Sbjct: 844 VRGNARL 850>NP_001511 Length = 2109 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 AVRGNSRL 9 + RGNSRL Sbjct: 1168 SARGNSRL 1175>NP_055999 Length = 1001 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KAVRGNSRL 9 K VR NSR+ Sbjct: 24 KKVRSNSRI 32>NP_001137854 Length = 1127 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KAVRGNSRL 9 K VR NSR+ Sbjct: 150 KKVRSNSRI 158>NP_777582 Length = 580 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KAVRGNSRL 9 +AVRG SRL Sbjct: 507 RAVRGWSRL 515>XP_006724043 Length = 1174 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KAVRGNSRL 9 KA RG SRL Sbjct: 1166 KAGRGGSRL 1174>XP_006720079 Length = 324 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 1 KAVRGN 6 KAVRGN Sbjct: 310 KAVRGN 315>XP_006716590 Length = 473 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KAVRGNSRL 9 +AVRG SRL Sbjct: 400 RAVRGWSRL 408>XP_006716589 Length = 568 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 KAVRGNSRL 9 +AVRG SRL Sbjct: 495 RAVRGWSRL 503>XP_006713136 Length = 1022 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 KAVRGNSRL 9 K VR NSR+ Sbjct: 45 KKVRSNSRI 53>NP_001139586 Length = 1110 Score = 16.2 bits (30), Expect = 5631 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 KAVRGNSRL 9 KA RG SRL Sbjct: 1102 KAGRGGSRL 1110>NP_004398 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KAVRGNSRL 9 ++ RGNSR+ Sbjct: 224 RSERGNSRM 232>NP_001073380 Length = 497 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 KAVRGNSRL 9 ++ RGNSR+ Sbjct: 208 RSERGNSRM 216>NP_005202 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 811 VKGNARL 817>NP_000213 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 825 VKGNARL 831>NP_001087241 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 821 VKGNARL 827>NP_001275634 Length = 972 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 811 VKGNARL 817>XP_005265799 Length = 973 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 822 VKGNARL 828>XP_005265798 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 825 VKGNARL 831>XP_005265797 Length = 977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 VRGNSRL 9 V+GN+RL Sbjct: 826 VKGNARL 832Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.129 0.337 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 478,433 Number of extensions: 378 Number of successful extensions: 21 Number of sequences better than 10000.0: 21 Number of HSP's gapped: 21 Number of HSP's successfully gapped: 21 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |