Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001243398 18 1935 NP_036462 18 1935 NP_001243397 18 1935 XP_005269721 18 1935 NP_003957 17 3301 XP_006714571 17 3301 XP_006714570 17 3301 XP_006714569 17 3301 NP_997204 17 4312 NP_001127880 16 5631 NP_000824 16 5631 NP_001127879 16 5631 XP_005255325 16 5631 XP_005255324 16 5631 NP_056193 16 7355 NP_201588 16 7355 NP_001070649 16 7355 NP_003662 16 7355 XP_005252345 16 7355 XP_005252344 16 7355 XP_005252343 16 7355 NP_060606 15 9605 NP_848622 15 9605 NP_113663 15 9605 XP_005263558 15 9605>NP_001243398 Length = 1781 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IYMRTKSAS 9 I MRTKSAS Sbjct: 1631 ISMRTKSAS 1639>NP_036462 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IYMRTKSAS 9 I MRTKSAS Sbjct: 1923 ISMRTKSAS 1931>NP_001243397 Length = 1890 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IYMRTKSAS 9 I MRTKSAS Sbjct: 1740 ISMRTKSAS 1748>XP_005269721 Length = 2073 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IYMRTKSAS 9 I MRTKSAS Sbjct: 1923 ISMRTKSAS 1931>NP_003957 Length = 1074 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YMRTKSAS 9 YMRT+S S Sbjct: 862 YMRTRSCS 869>XP_006714571 Length = 917 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YMRTKSAS 9 YMRT+S S Sbjct: 705 YMRTRSCS 712>XP_006714570 Length = 1074 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YMRTKSAS 9 YMRT+S S Sbjct: 862 YMRTRSCS 869>XP_006714569 Length = 1074 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 YMRTKSAS 9 YMRT+S S Sbjct: 862 YMRTRSCS 869>NP_997204 Length = 480 Score = 16.5 bits (31), Expect = 4312 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 YMRTKS 7 YMRTKS Sbjct: 212 YMRTKS 217>NP_001127880 Length = 1281 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YMRTKSAS 9 Y++TKS+S Sbjct: 1105 YLKTKSSS 1112>NP_000824 Length = 1464 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YMRTKSAS 9 Y++TKS+S Sbjct: 1105 YLKTKSSS 1112>NP_001127879 Length = 1464 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YMRTKSAS 9 Y++TKS+S Sbjct: 1105 YLKTKSSS 1112>XP_005255325 Length = 1333 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YMRTKSAS 9 Y++TKS+S Sbjct: 1157 YLKTKSSS 1164>XP_005255324 Length = 1516 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 YMRTKSAS 9 Y++TKS+S Sbjct: 1157 YLKTKSSS 1164>NP_056193 Length = 4388 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IYMRTKSAS 9 +Y+RT+S + Sbjct: 2855 VYLRTRSTA 2863>NP_201588 Length = 498 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IYMRTKSAS 9 +Y R KSAS Sbjct: 61 LYSRPKSAS 69>NP_001070649 Length = 461 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IYMRTKSAS 9 +Y R KSAS Sbjct: 24 LYSRPKSAS 32>NP_003662 Length = 459 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IYMRTKSAS 9 +Y R KSAS Sbjct: 61 LYSRPKSAS 69>XP_005252345 Length = 448 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IYMRTKSAS 9 +Y R KSAS Sbjct: 24 LYSRPKSAS 32>XP_005252344 Length = 485 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IYMRTKSAS 9 +Y R KSAS Sbjct: 61 LYSRPKSAS 69>XP_005252343 Length = 485 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 IYMRTKSAS 9 +Y R KSAS Sbjct: 61 LYSRPKSAS 69>NP_060606 Length = 3477 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 1 IYMRTKSA 8 +Y++TK+A Sbjct: 2016 LYLKTKAA 2023>NP_848622 Length = 1124 Score = 15.4 bits (28), Expect = 9605 Identities = 5/6 (83%), Positives = 6/6 (100%) Query: 2 YMRTKS 7 YMRT+S Sbjct: 562 YMRTRS 567>NP_113663 Length = 854 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IYMRTKS 7 IYM+TK+ Sbjct: 469 IYMQTKN 475>XP_005263558 Length = 833 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 IYMRTKS 7 IYM+TK+ Sbjct: 469 IYMQTKN 475Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.317 0.116 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 292,905 Number of extensions: 293 Number of successful extensions: 25 Number of sequences better than 10000.0: 25 Number of HSP's gapped: 25 Number of HSP's successfully gapped: 25 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |