Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001755 18 1135 NP_849155 18 1935 NP_001275701 18 1935 NP_004561 18 1935 XP_005253450 18 1935 XP_006719151 18 1935 XP_006714150 18 1935 XP_005262815 18 1935 XP_005262814 18 1935 XP_006714149 18 1935 XP_006714148 18 1935 XP_006714147 18 1935 XP_005274043 17 3301 XP_006718611 17 3301 NP_001034841 17 3301 YP_003024035 17 3301 NP_001005182 17 4312 NP_991111 17 4312 XP_005248511 17 4312 XP_006714627 17 4312 NP_001258640 16 5631 NP_055395 16 5631 NP_001258641 16 5631 NP_003804 16 5631 NP_653327 16 5631 NP_001186312 16 5631 NP_001186311 16 5631 NP_001186310 16 5631 NP_001186309 16 5631 XP_005252006 16 5631 XP_006717147 16 5631 XP_005265883 16 5631 NP_001254772 16 7355 NP_004889 16 7355 XP_006714117 16 7355 XP_005265844 16 7355 NP_060954 15 9605 NP_001005465 15 9605>NP_001755 Length = 333 Score = 18.5 bits (36), Expect = 1135 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 I+VPSL+LL Sbjct: 308 IIVPSLLLL 316>NP_849155 Length = 537 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 248 VVVPSMLLL 256>NP_001275701 Length = 1486 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 IV PSLMLL Sbjct: 200 IVEPSLMLL 208>NP_004561 Length = 1445 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 IV PSLMLL Sbjct: 200 IVEPSLMLL 208>XP_005253450 Length = 1486 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 IV PSLMLL Sbjct: 200 IVEPSLMLL 208>XP_006719151 Length = 1486 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 IV PSLMLL Sbjct: 200 IVEPSLMLL 208>XP_006714150 Length = 417 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 191 VVVPSMLLL 199>XP_005262815 Length = 474 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 248 VVVPSMLLL 256>XP_005262814 Length = 480 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 191 VVVPSMLLL 199>XP_006714149 Length = 480 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 191 VVVPSMLLL 199>XP_006714148 Length = 537 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 248 VVVPSMLLL 256>XP_006714147 Length = 537 Score = 17.7 bits (34), Expect = 1935 Identities = 6/9 (66%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 +VVPS++LL Sbjct: 248 VVVPSMLLL 256>XP_005274043 Length = 365 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVPSLMLL 9 ++PSLMLL Sbjct: 24 ILPSLMLL 31>XP_006718611 Length = 433 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVPSLMLL 9 ++PSLMLL Sbjct: 24 ILPSLMLL 31>NP_001034841 Length = 541 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVPSLMLL 9 ++PSLMLL Sbjct: 24 ILPSLMLL 31>YP_003024035 Length = 459 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IVVPSLMLL 9 ++VP++MLL Sbjct: 4 LIVPTIMLL 12>NP_001005182 Length = 312 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 I+ P+LMLL Sbjct: 153 IIFPALMLL 161>NP_991111 Length = 276 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 +V PS+MLL Sbjct: 109 VVEPSMMLL 117>XP_005248511 Length = 222 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 +V PS+MLL Sbjct: 55 VVEPSMMLL 63>XP_006714627 Length = 272 Score = 16.5 bits (31), Expect = 4312 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 +V PS+MLL Sbjct: 105 VVEPSMMLL 113>NP_001258640 Length = 411 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVPSLMLL 9 V PSLMLL Sbjct: 190 VPPSLMLL 197>NP_055395 Length = 477 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVPSLMLL 9 V PSLMLL Sbjct: 190 VPPSLMLL 197>NP_001258641 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVPSLMLL 9 V PSLMLL Sbjct: 27 VPPSLMLL 34>NP_003804 Length = 722 Score = 16.2 bits (30), Expect = 5631 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 IV+PSL +L Sbjct: 687 IVIPSLSVL 695>NP_653327 Length = 691 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VPSLMLL 9 VPS+MLL Sbjct: 45 VPSIMLL 51>NP_001186312 Length = 663 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VPSLMLL 9 VPS+MLL Sbjct: 17 VPSIMLL 23>NP_001186311 Length = 677 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VPSLMLL 9 VPS+MLL Sbjct: 31 VPSIMLL 37>NP_001186310 Length = 680 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VPSLMLL 9 VPS+MLL Sbjct: 34 VPSIMLL 40>NP_001186309 Length = 693 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VPSLMLL 9 VPS+MLL Sbjct: 47 VPSIMLL 53>XP_005252006 Length = 314 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVPSLMLL 9 V PSLMLL Sbjct: 27 VPPSLMLL 34>XP_006717147 Length = 437 Score = 16.2 bits (30), Expect = 5631 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VVPSLMLL 9 V PSLMLL Sbjct: 190 VPPSLMLL 197>XP_005265883 Length = 679 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 VPSLMLL 9 VPS+MLL Sbjct: 33 VPSIMLL 39>NP_001254772 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 ++VPS ML+ Sbjct: 723 VMVPSTMLM 731>NP_004889 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 ++VPS ML+ Sbjct: 723 VMVPSTMLM 731>XP_006714117 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 ++VPS ML+ Sbjct: 723 VMVPSTMLM 731>XP_005265844 Length = 846 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 ++VPS ML+ Sbjct: 723 VMVPSTMLM 731>NP_060954 Length = 550 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVVPSLMLL 9 +++PS MLL Sbjct: 29 LMIPSQMLL 37>NP_001005465 Length = 313 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVVPSLML 8 I+VP LM+ Sbjct: 77 IIVPRLMM 84Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.340 0.154 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 575,715 Number of extensions: 274 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |