Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000042 17 2528 XP_005271621 17 2528 XP_006718907 17 2528 XP_006718906 17 2528 XP_005271619 17 2528 XP_005271618 17 2528 NP_000284 17 3301 NP_001027005 17 3301 XP_005256041 17 3301 XP_005256040 17 3301 NP_006717 16 7355 NP_056493 16 7355 NP_001186211 16 7355 XP_006719869 16 7355 XP_006719868 16 7355 XP_005266409 16 7355 XP_005266407 16 7355 XP_005266403 16 7355 XP_006719867 16 7355 XP_006719866 16 7355 XP_005266405 16 7355 XP_005266404 16 7355 XP_005263433 16 7355 XP_005263432 16 7355 XP_005263431 16 7355 XP_006714492 16 7355 XP_005263430 16 7355 XP_005263429 16 7355 NP_001005490 15 9605>NP_000042 Length = 3056 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVELLMML 9 IVVELLM L Sbjct: 1343 IVVELLMTL 1351>XP_005271621 Length = 2708 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVELLMML 9 IVVELLM L Sbjct: 995 IVVELLMTL 1003>XP_006718907 Length = 3050 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVELLMML 9 IVVELLM L Sbjct: 1337 IVVELLMTL 1345>XP_006718906 Length = 3056 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVELLMML 9 IVVELLM L Sbjct: 1343 IVVELLMTL 1351>XP_005271619 Length = 3056 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVELLMML 9 IVVELLM L Sbjct: 1343 IVVELLMTL 1351>XP_005271618 Length = 3056 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVVELLMML 9 IVVELLM L Sbjct: 1343 IVVELLMTL 1351>NP_000284 Length = 1093 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 IVVELLMML 9 IVVELLM++ Sbjct: 998 IVVELLMVV 1006>NP_001027005 Length = 1086 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 IVVELLMML 9 IVVELLM++ Sbjct: 991 IVVELLMVV 999>XP_005256041 Length = 1086 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 IVVELLMML 9 IVVELLM++ Sbjct: 991 IVVELLMVV 999>XP_005256040 Length = 1093 Score = 16.9 bits (32), Expect = 3301 Identities = 7/9 (77%), Positives = 9/9 (100%) Query: 1 IVVELLMML 9 IVVELLM++ Sbjct: 998 IVVELLMVV 1006>NP_006717 Length = 2863 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>NP_056493 Length = 2946 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1936 VVELVMLL 1943>NP_001186211 Length = 2851 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>XP_006719869 Length = 2943 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1933 VVELVMLL 1940>XP_006719868 Length = 2938 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1933 VVELVMLL 1940>XP_005266409 Length = 1430 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 399 VVELVMLL 406>XP_005266407 Length = 2641 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1610 VVELVMLL 1617>XP_005266403 Length = 2941 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1936 VVELVMLL 1943>XP_006719867 Length = 2961 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1930 VVELVMLL 1937>XP_006719866 Length = 2962 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1936 VVELVMLL 1943>XP_005266405 Length = 2964 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1933 VVELVMLL 1940>XP_005266404 Length = 2967 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1936 VVELVMLL 1943>XP_005263433 Length = 2832 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1814 VVELVMLL 1821>XP_005263432 Length = 2852 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>XP_005263431 Length = 2857 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>XP_006714492 Length = 2867 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>XP_005263430 Length = 2868 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>XP_005263429 Length = 2868 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 VVEL+M+L Sbjct: 1850 VVELVMLL 1857>NP_001005490 Length = 312 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 8/8 (100%) Query: 2 VVELLMML 9 ++EL+M+L Sbjct: 192 IIELMMLL 199Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.351 0.162 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 231,810 Number of extensions: 179 Number of successful extensions: 29 Number of sequences better than 10000.0: 29 Number of HSP's gapped: 29 Number of HSP's successfully gapped: 29 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 14 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |