Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_000305 19 665 XP_006717990 19 665 XP_006717989 19 665 NP_689777 17 3301 NP_060360 17 3301 XP_006716573 17 3301 XP_005250858 17 3301 XP_005250857 17 3301 XP_005260633 17 4312 NP_006837 16 5631 NP_001121170 16 5631 NP_001121171 16 5631 NP_004123 16 7355 NP_005434 16 7355 NP_001171131 16 7355 NP_071328 16 7355 NP_004661 16 7355 NP_001002909 16 7355 NP_001015880 16 7355 XP_006721846 16 7355 XP_006721845 16 7355 XP_006721844 16 7355 XP_006716779 16 7355 XP_005272199 16 7355 NP_055644 16 7355 NP_997235 15 9605 NP_001017420 15 9605 NP_001264243 15 9605 NP_073568 15 9605 NP_653292 15 9605 NP_001264242 15 9605 NP_001074003 15 9605 XP_005254452 15 9605 XP_005254451 15 9605 XP_006716360 15 9605 XP_006714247 15 9605 XP_005262992 15 9605 XP_005245510 15 9605>NP_000305 Length = 403 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 IVSRNKRR 8 IVSRNKRR Sbjct: 8 IVSRNKRR 15>XP_006717990 Length = 175 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 IVSRNKRR 8 IVSRNKRR Sbjct: 8 IVSRNKRR 15>XP_006717989 Length = 388 Score = 19.2 bits (38), Expect = 665 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 1 IVSRNKRR 8 IVSRNKRR Sbjct: 8 IVSRNKRR 15>NP_689777 Length = 3997 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVSRNKRRS 9 + SRN+RRS Sbjct: 1440 LTSRNERRS 1448>NP_060360 Length = 4022 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVSRNKRRS 9 + SRN+RRS Sbjct: 1465 LTSRNERRS 1473>XP_006716573 Length = 1776 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVSRNKRRS 9 + SRN+RRS Sbjct: 1465 LTSRNERRS 1473>XP_005250858 Length = 4022 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVSRNKRRS 9 + SRN+RRS Sbjct: 1465 LTSRNERRS 1473>XP_005250857 Length = 4022 Score = 16.9 bits (32), Expect = 3301 Identities = 6/9 (66%), Positives = 8/9 (88%) Query: 1 IVSRNKRRS 9 + SRN+RRS Sbjct: 1465 LTSRNERRS 1473>XP_005260633 Length = 1364 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 IVSRNKRR 8 + SRNKRR Sbjct: 1 MASRNKRR 8>NP_006837 Length = 1064 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SRNKR+S Sbjct: 421 SRNKRQS 427>NP_001121170 Length = 1094 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SRNKR+S Sbjct: 421 SRNKRQS 427>NP_001121171 Length = 916 Score = 16.2 bits (30), Expect = 5631 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SRNKR+S Sbjct: 421 SRNKRQS 427>NP_004123 Length = 560 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 166 SRHKRRS 172>NP_005434 Length = 624 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VSRNKR 7 VSRNKR Sbjct: 35 VSRNKR 40>NP_001171131 Length = 534 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 140 SRHKRRS 146>NP_071328 Length = 904 Score = 15.8 bits (29), Expect = 7355 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VSRNKRRS 9 VSR KRRS Sbjct: 731 VSRLKRRS 738>NP_004661 Length = 614 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VSRNKR 7 VSRNKR Sbjct: 25 VSRNKR 30>NP_001002909 Length = 1502 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 968 SRSKRRS 974>NP_001015880 Length = 619 Score = 15.8 bits (29), Expect = 7355 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 VSRNKR 7 VSRNKR Sbjct: 25 VSRNKR 30>XP_006721846 Length = 1424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 890 SRSKRRS 896>XP_006721845 Length = 1424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 890 SRSKRRS 896>XP_006721844 Length = 1424 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 890 SRSKRRS 896>XP_006716779 Length = 2399 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 1 IVSRNKRR 8 I++RNKR+ Sbjct: 408 ILTRNKRK 415>XP_005272199 Length = 1032 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 54 SRDKRRS 60>NP_055644 Length = 1031 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 SR+KRRS Sbjct: 54 SRDKRRS 60>NP_997235 Length = 525 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 S+NKRR+ Sbjct: 292 SKNKRRA 298>NP_001017420 Length = 601 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VSRNKRRS 9 VSRN R S Sbjct: 158 VSRNSRNS 165>NP_001264243 Length = 662 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 +RNKRR+ Sbjct: 454 TRNKRRA 460>NP_073568 Length = 243 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 ++NKRRS Sbjct: 44 AKNKRRS 50>NP_653292 Length = 719 Score = 15.4 bits (28), Expect = 9605 Identities = 4/8 (50%), Positives = 7/8 (87%) Query: 1 IVSRNKRR 8 ++ RN+RR Sbjct: 430 LIQRNRRR 437>NP_001264242 Length = 1419 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 +RNKRR+ Sbjct: 454 TRNKRRA 460>NP_001074003 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSRNKRRS 9 V +NKRR+ Sbjct: 1249 VGKNKRRT 1256>XP_005254452 Length = 2188 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSRNKRRS 9 V +NKRR+ Sbjct: 1249 VGKNKRRT 1256>XP_005254451 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VSRNKRRS 9 V +NKRR+ Sbjct: 1249 VGKNKRRT 1256>XP_006716360 Length = 601 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 6/8 (75%) Query: 2 VSRNKRRS 9 VSRN R S Sbjct: 158 VSRNSRNS 165>XP_006714247 Length = 393 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 S+NKRR+ Sbjct: 160 SKNKRRA 166>XP_005262992 Length = 524 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 S+NKRR+ Sbjct: 292 SKNKRRA 298>XP_005245510 Length = 242 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 3 SRNKRRS 9 ++NKRRS Sbjct: 44 AKNKRRS 50Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.127 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 453,888 Number of extensions: 530 Number of successful extensions: 38 Number of sequences better than 10000.0: 38 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 38 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.9 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |