Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002040 18 1935 NP_002696 17 4312 XP_006720965 17 4312 NP_001103691 16 7355 NP_001103690 16 7355 NP_006774 16 7355 NP_001103689 16 7355 NP_705895 15 9605 NP_002137 15 9605 XP_005257339 15 9605 XP_005257337 15 9605 XP_006721918 15 9605 XP_005257334 15 9605 XP_006721917 15 9605 XP_005249789 15 9605 XP_005249788 15 9605 XP_006715778 15 9605 XP_005249787 15 9605 NP_004875 15 9605 NP_109377 15 9605>NP_002040 Length = 413 Score = 17.7 bits (34), Expect = 1935 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 IVSKRARTQ 9 IVSKRA TQ Sbjct: 249 IVSKRAGTQ 257>NP_002696 Length = 1756 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VSKRARTQ 9 VSKRAR Q Sbjct: 822 VSKRARLQ 829>XP_006720965 Length = 1769 Score = 16.5 bits (31), Expect = 4312 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 VSKRARTQ 9 VSKRAR Q Sbjct: 835 VSKRARLQ 842>NP_001103691 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SKRARTQ 9 SKRA+TQ Sbjct: 222 SKRAQTQ 228>NP_001103690 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SKRARTQ 9 SKRA+TQ Sbjct: 222 SKRAQTQ 228>NP_006774 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SKRARTQ 9 SKRA+TQ Sbjct: 222 SKRAQTQ 228>NP_001103689 Length = 261 Score = 15.8 bits (29), Expect = 7355 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 SKRARTQ 9 SKRA+TQ Sbjct: 222 SKRAQTQ 228>NP_705895 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 191 SKRART 196>NP_002137 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 188 SKRART 193>XP_005257339 Length = 299 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 56 SKRART 61>XP_005257337 Length = 358 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 115 SKRART 120>XP_006721918 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 188 SKRART 193>XP_005257334 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 188 SKRART 193>XP_006721917 Length = 431 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 188 SKRART 193>XP_005249789 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 191 SKRART 196>XP_005249788 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 191 SKRART 196>XP_006715778 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 191 SKRART 196>XP_005249787 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 191 SKRART 196>NP_004875 Length = 814 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 IVSKRARTQ 9 +VS++AR Q Sbjct: 126 VVSRKARIQ 134>NP_109377 Length = 443 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 SKRART 8 SKRART Sbjct: 191 SKRART 196Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.321 0.122 0.287 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 286,268 Number of extensions: 345 Number of successful extensions: 20 Number of sequences better than 10000.0: 20 Number of HSP's gapped: 20 Number of HSP's successfully gapped: 20 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.0 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |