Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 19 665 NP_671714 19 665 XP_006715890 19 665 XP_005250160 19 665 XP_005250159 19 665 NP_055786 18 1935 NP_055952 18 1935 XP_005250906 18 1935 NP_001138766 16 7355 NP_060767 16 7355 NP_001138765 16 7355 XP_005265373 16 7355 NP_783863 15 9605 NP_001001998 15 9605 NP_944489 15 9605 NP_001074003 15 9605 XP_005254452 15 9605 XP_005254451 15 9605 XP_006719749 15 9605 XP_005269275 15 9605 XP_005263533 15 9605 XP_005263532 15 9605 NP_115512 15 9605 NP_002676 15 9605>NP_005742 Length = 3907 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 IVRQSI+DE Sbjct: 1560 IVRQSIHDE 1568>NP_671714 Length = 3899 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 IVRQSI+DE Sbjct: 1560 IVRQSIHDE 1568>XP_006715890 Length = 3860 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 IVRQSI+DE Sbjct: 1560 IVRQSIHDE 1568>XP_005250160 Length = 3939 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 IVRQSI+DE Sbjct: 1560 IVRQSIHDE 1568>XP_005250159 Length = 3952 Score = 19.2 bits (38), Expect = 665 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 IVRQSI+DE Sbjct: 1560 IVRQSIHDE 1568>NP_055786 Length = 817 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 +VR+++NDE Sbjct: 174 VVRKTVNDE 182>NP_055952 Length = 821 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 +VR+++NDE Sbjct: 175 VVRKTVNDE 183>XP_005250906 Length = 785 Score = 17.7 bits (34), Expect = 1935 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 IVRQSINDE 9 +VR+++NDE Sbjct: 139 VVRKTVNDE 147>NP_001138766 Length = 612 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 + RQS+ND Sbjct: 590 LFRQSLND 597>NP_060767 Length = 654 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 + RQS+ND Sbjct: 632 LFRQSLND 639>NP_001138765 Length = 636 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 + RQS+ND Sbjct: 614 LFRQSLND 621>XP_005265373 Length = 599 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 + RQS+ND Sbjct: 577 LFRQSLND 584>NP_783863 Length = 1027 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRQSINDE 9 VR+ +NDE Sbjct: 125 VREFLNDE 132>NP_001001998 Length = 885 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 +VRQ IN+ Sbjct: 561 LVRQQINE 568>NP_944489 Length = 976 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRQSINDE 9 VR+ +NDE Sbjct: 125 VREFLNDE 132>NP_001074003 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IVRQSINDE 9 ++R S+N+E Sbjct: 1066 VIRTSLNNE 1074>XP_005254452 Length = 2188 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IVRQSINDE 9 ++R S+N+E Sbjct: 1066 VIRTSLNNE 1074>XP_005254451 Length = 2214 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 8/9 (88%) Query: 1 IVRQSINDE 9 ++R S+N+E Sbjct: 1066 VIRTSLNNE 1074>XP_006719749 Length = 977 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRQSINDE 9 VR+ +NDE Sbjct: 125 VREFLNDE 132>XP_005269275 Length = 1028 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 VRQSINDE 9 VR+ +NDE Sbjct: 125 VREFLNDE 132>XP_005263533 Length = 458 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 +VRQ IN+ Sbjct: 129 LVRQQINE 136>XP_005263532 Length = 914 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 +VRQ IN+ Sbjct: 585 LVRQQINE 592>NP_115512 Length = 626 Score = 15.4 bits (28), Expect = 9605 Identities = 4/9 (44%), Positives = 7/9 (77%) Query: 1 IVRQSINDE 9 +VR +ND+ Sbjct: 498 VVRHGVNDK 506>NP_002676 Length = 860 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 IVRQSIND 8 +VRQ IN+ Sbjct: 561 LVRQQINE 568Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.313 0.132 0.323 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 422,050 Number of extensions: 736 Number of successful extensions: 24 Number of sequences better than 10000.0: 24 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 24 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |