Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_064450 20 509 XP_005273257 20 509 NP_001155018 17 3301 NP_001268451 17 3301 NP_001268449 17 3301 NP_877954 17 3301 NP_001268450 17 3301 NP_115874 17 3301 NP_001229313 17 3301 NP_001229323 17 3301 XP_005267279 17 3301 XP_006715674 17 3301 XP_005267275 17 3301 XP_006715673 17 3301 XP_005267272 17 3301 XP_005267274 17 3301 XP_006715669 17 3301 XP_006715668 17 3301 XP_005267271 17 3301 NP_001006608 17 4312 NP_055649 17 4312 XP_005257941 17 4312 XP_005257940 17 4312 XP_006722274 17 4312 XP_006722273 17 4312 XP_005257939 17 4312 XP_006722272 17 4312 XP_005257937 17 4312 XP_005257936 17 4312 XP_005257935 17 4312 XP_006722271 17 4312 NP_001360 16 5631 XP_005248319 16 5631 NP_001005476 16 5631 NP_003619 16 5631 NP_065899 16 7355 NP_001136018 16 7355 NP_055736 16 7355 NP_001008701 16 7355 NP_361013 16 7355 XP_005259876 16 7355 XP_006722752 16 7355 XP_005259875 16 7355 XP_006722751 16 7355 XP_005252606 16 7355 NP_001189394 15 9605 NP_001189393 15 9605 NP_006615 15 9605 NP_001189395 15 9605 NP_001189396 15 9605 NP_997644 15 9605 NP_001189397 15 9605 NP_003441 15 9605 XP_005252420 15 9605 XP_006717439 15 9605 XP_005252419 15 9605 XP_005252418 15 9605 XP_005252417 15 9605 XP_005252416 15 9605 XP_006710322 15 9605>NP_064450 Length = 1722 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TTRQLSSP 9 TTRQLSSP Sbjct: 422 TTRQLSSP 429>XP_005273257 Length = 1726 Score = 19.6 bits (39), Expect = 509 Identities = 8/8 (100%), Positives = 8/8 (100%) Query: 2 TTRQLSSP 9 TTRQLSSP Sbjct: 422 TTRQLSSP 429>NP_001155018 Length = 1015 Score = 16.9 bits (32), Expect = 3301 Identities = 6/8 (75%), Positives = 8/8 (100%) Query: 2 TTRQLSSP 9 TTR++SSP Sbjct: 421 TTRRVSSP 428>NP_001268451 Length = 793 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 ITTRQL S Sbjct: 661 ITTRQLES 668>NP_001268449 Length = 840 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 ITTRQL S Sbjct: 708 ITTRQLES 715>NP_877954 Length = 824 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 ITTRQL S Sbjct: 692 ITTRQLES 699>NP_001268450 Length = 880 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 ITTRQL S Sbjct: 748 ITTRQLES 755>NP_115874 Length = 840 Score = 16.9 bits (32), Expect = 3301 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 ITTRQL S Sbjct: 708 ITTRQLES 715>NP_001229313 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>NP_001229323 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>XP_005267279 Length = 404 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 31 VTTRKVSAP 39>XP_006715674 Length = 404 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 31 VTTRKVSAP 39>XP_005267275 Length = 404 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 31 VTTRKVSAP 39>XP_006715673 Length = 404 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 31 VTTRKVSAP 39>XP_005267272 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>XP_005267274 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>XP_006715669 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>XP_006715668 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>XP_005267271 Length = 610 Score = 16.9 bits (32), Expect = 3301 Identities = 5/9 (55%), Positives = 9/9 (100%) Query: 1 ITTRQLSSP 9 +TTR++S+P Sbjct: 237 VTTRKVSAP 245>NP_001006608 Length = 1700 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>NP_055649 Length = 1700 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_005257941 Length = 969 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_005257940 Length = 1018 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_006722274 Length = 1576 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_006722273 Length = 1600 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_005257939 Length = 1606 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 73 TRQLSTP 79>XP_006722272 Length = 1635 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_005257937 Length = 1651 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_005257936 Length = 1665 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_005257935 Length = 1676 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>XP_006722271 Length = 1700 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRQLSSP 9 TRQLS+P Sbjct: 167 TRQLSTP 173>NP_001360 Length = 4624 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 +TTR LSS Sbjct: 1873 VTTRDLSS 1880>XP_005248319 Length = 4609 Score = 16.2 bits (30), Expect = 5631 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ITTRQLSS 8 +TTR LSS Sbjct: 1858 VTTRDLSS 1865>NP_001005476 Length = 1149 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ITTRQLSSP 9 +T+RQ S+P Sbjct: 291 VTSRQTSNP 299>NP_003619 Length = 1192 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ITTRQLSSP 9 +T+RQ S+P Sbjct: 291 VTSRQTSNP 299>NP_065899 Length = 1359 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T RQ+SSP Sbjct: 537 TGRQVSSP 544>NP_001136018 Length = 1076 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ITTRQLSSP 9 ++ RQ+SSP Sbjct: 416 LSNRQVSSP 424>NP_055736 Length = 1469 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T+R LSSP Sbjct: 1366 TSRPLSSP 1373>NP_001008701 Length = 1474 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T+R LSSP Sbjct: 1371 TSRPLSSP 1378>NP_361013 Length = 1076 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ITTRQLSSP 9 ++ RQ+SSP Sbjct: 416 LSNRQVSSP 424>XP_005259876 Length = 1498 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T+R LSSP Sbjct: 1395 TSRPLSSP 1402>XP_006722752 Length = 1462 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T+R LSSP Sbjct: 1359 TSRPLSSP 1366>XP_005259875 Length = 1493 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T+R LSSP Sbjct: 1390 TSRPLSSP 1397>XP_006722751 Length = 1498 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T+R LSSP Sbjct: 1395 TSRPLSSP 1402>XP_005252606 Length = 1221 Score = 15.8 bits (29), Expect = 7355 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 2 TTRQLSSP 9 T RQ+SSP Sbjct: 399 TGRQVSSP 406>NP_001189394 Length = 517 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_001189393 Length = 548 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_006615 Length = 602 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_001189395 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_001189396 Length = 514 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_997644 Length = 567 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_001189397 Length = 568 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>NP_003441 Length = 407 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ITTRQLSSP 9 ++ RQ+SSP Sbjct: 259 LSRRQVSSP 267>XP_005252420 Length = 547 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>XP_006717439 Length = 548 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>XP_005252419 Length = 548 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>XP_005252418 Length = 548 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>XP_005252417 Length = 601 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>XP_005252416 Length = 602 Score = 15.4 bits (28), Expect = 9605 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 2 TTRQLS 7 TTRQLS Sbjct: 52 TTRQLS 57>XP_006710322 Length = 657 Score = 15.4 bits (28), Expect = 9605 Identities = 7/9 (77%), Positives = 7/9 (77%) Query: 1 ITTRQLSSP 9 ITT LSSP Sbjct: 322 ITTLCLSSP 330Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.308 0.117 0.301 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 527,210 Number of extensions: 983 Number of successful extensions: 60 Number of sequences better than 10000.0: 60 Number of HSP's gapped: 60 Number of HSP's successfully gapped: 60 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.5 bits) S2: 28 (15.4 bits)
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CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |