Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_002430 19 869 NP_001273327 17 4312 XP_006715413 17 4312 NP_001268421 16 5631 NP_000170 16 5631 NP_001268422 16 5631 NP_001268423 16 5631 XP_005264328 16 5631 XP_006726631 15 9605 XP_006725632 15 9605 XP_006720880 15 9605 XP_006710311 15 9605>NP_002430 Length = 1137 Score = 18.9 bits (37), Expect = 869 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISTRMGAAD 9 I TRMGAAD Sbjct: 935 IFTRMGAAD 943>NP_001273327 Length = 542 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRMGAAD 9 TR+GAAD Sbjct: 137 TRVGAAD 143>XP_006715413 Length = 464 Score = 16.5 bits (31), Expect = 4312 Identities = 6/7 (85%), Positives = 7/7 (100%) Query: 3 TRMGAAD 9 TR+GAAD Sbjct: 137 TRVGAAD 143>NP_001268421 Length = 1230 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISTRMGAAD 9 + TR+GA+D Sbjct: 1043 VFTRLGASD 1051>NP_000170 Length = 1360 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISTRMGAAD 9 + TR+GA+D Sbjct: 1173 VFTRLGASD 1181>NP_001268422 Length = 1058 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISTRMGAAD 9 + TR+GA+D Sbjct: 871 VFTRLGASD 879>NP_001268423 Length = 1058 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISTRMGAAD 9 + TR+GA+D Sbjct: 871 VFTRLGASD 879>XP_005264328 Length = 1261 Score = 16.2 bits (30), Expect = 5631 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISTRMGAAD 9 + TR+GA+D Sbjct: 1074 VFTRLGASD 1082>XP_006726631 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ISTRMGA 7 IST MGA Sbjct: 81 ISTHMGA 87>XP_006725632 Length = 119 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ISTRMGA 7 IST MGA Sbjct: 81 ISTHMGA 87>XP_006720880 Length = 232 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ISTRMGA 7 IST MGA Sbjct: 81 ISTHMGA 87>XP_006710311 Length = 119 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ISTRMGA 7 IST MGA Sbjct: 81 ISTHMGA 87Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.123 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 303,241 Number of extensions: 231 Number of successful extensions: 12 Number of sequences better than 10000.0: 12 Number of HSP's gapped: 12 Number of HSP's successfully gapped: 12 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.8 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |