Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001017981 18 1935 NP_438170 16 5631 NP_077015 16 5631 NP_001244899 16 5631 NP_036456 16 7355 NP_001013682 16 7355 XP_005270918 16 7355 NP_001138578 15 9605 NP_116232 15 9605 NP_064536 15 9605>NP_001017981 Length = 377 Score = 17.7 bits (34), Expect = 1935 Identities = 7/9 (77%), Positives = 8/9 (88%) Query: 1 ISQMALRPV 9 ISQ+ LRPV Sbjct: 170 ISQLLLRPV 178>NP_438170 Length = 434 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QMALRP 8 QMALRP Sbjct: 369 QMALRP 374>NP_077015 Length = 1004 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QMALRP 8 QMALRP Sbjct: 606 QMALRP 611>NP_001244899 Length = 740 Score = 16.2 bits (30), Expect = 5631 Identities = 6/6 (100%), Positives = 6/6 (100%) Query: 3 QMALRP 8 QMALRP Sbjct: 606 QMALRP 611>NP_036456 Length = 824 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISQMALRPV 9 +SQ ++RPV Sbjct: 788 VSQESMRPV 796>NP_001013682 Length = 626 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ISQMALRP 8 +SQM RP Sbjct: 53 VSQMTFRP 60>XP_005270918 Length = 592 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 6/8 (75%) Query: 1 ISQMALRP 8 +SQM RP Sbjct: 53 VSQMTFRP 60>NP_001138578 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQMALRPV 9 S+M +RPV Sbjct: 450 SEMKIRPV 457>NP_116232 Length = 461 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQMALRPV 9 S+M +RPV Sbjct: 450 SEMKIRPV 457>NP_064536 Length = 370 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SQMALRP 8 SQM +RP Sbjct: 269 SQMVIRP 275Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.330 0.134 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 370,993 Number of extensions: 317 Number of successful extensions: 10 Number of sequences better than 10000.0: 10 Number of HSP's gapped: 10 Number of HSP's successfully gapped: 10 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.2 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |