Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_005742 20 390 NP_671714 20 390 XP_006715890 20 390 XP_005250160 20 390 XP_005250159 20 390 XP_006714215 17 4312 XP_006714214 17 4312 XP_005262915 17 4312 NP_055806 17 4312 NP_835235 16 5631 NP_006222 16 7355 NP_005909 16 7355 NP_006501 16 7355 NP_001269332 16 7355 NP_001269333 16 7355 NP_631905 16 7355 NP_775899 16 7355 NP_001136157 15 9605 NP_055530 15 9605 NP_060224 15 9605 NP_001264044 15 9605 NP_004183 15 9605 NP_054872 15 9605 NP_001166945 15 9605 NP_001026786 15 9605 NP_001171922 15 9605 XP_005274840 15 9605 XP_005274491 15 9605 XP_005255329 15 9605 XP_006720940 15 9605 XP_005255327 15 9605 XP_006719916 15 9605 XP_006719915 15 9605 XP_006719914 15 9605 XP_005266530 15 9605 XP_006719913 15 9605 XP_006719912 15 9605 XP_006719911 15 9605 XP_006719910 15 9605 XP_006719909 15 9605 XP_006719010 15 9605 XP_005271793 15 9605 XP_006715189 15 9605 XP_006715188 15 9605 NP_055634 15 9605 NP_112567 15 9605 NP_000686 15 9605 NP_065126 15 9605>NP_005742 Length = 3907 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ISQFTEKID 9 ISQFTEKI+ Sbjct: 2821 ISQFTEKIE 2829>NP_671714 Length = 3899 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ISQFTEKID 9 ISQFTEKI+ Sbjct: 2813 ISQFTEKIE 2821>XP_006715890 Length = 3860 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ISQFTEKID 9 ISQFTEKI+ Sbjct: 2774 ISQFTEKIE 2782>XP_005250160 Length = 3939 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ISQFTEKID 9 ISQFTEKI+ Sbjct: 2853 ISQFTEKIE 2861>XP_005250159 Length = 3952 Score = 20.0 bits (40), Expect = 390 Identities = 8/9 (88%), Positives = 9/9 (100%) Query: 1 ISQFTEKID 9 ISQFTEKI+ Sbjct: 2866 ISQFTEKIE 2874>XP_006714215 Length = 3544 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +SQF EKI Sbjct: 445 LSQFAEKI 452>XP_006714214 Length = 3544 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +SQF EKI Sbjct: 445 LSQFAEKI 452>XP_005262915 Length = 3544 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +SQF EKI Sbjct: 445 LSQFAEKI 452>NP_055806 Length = 3526 Score = 16.5 bits (31), Expect = 4312 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +SQF EKI Sbjct: 427 LSQFAEKI 434>NP_835235 Length = 505 Score = 16.2 bits (30), Expect = 5631 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 + QFTEK+ Sbjct: 253 LHQFTEKV 260>NP_006222 Length = 2286 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 8/8 (100%) Query: 2 SQFTEKID 9 SQ+T+K+D Sbjct: 38 SQWTDKMD 45>NP_005909 Length = 338 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 ISQ T K+D Sbjct: 209 ISQCTPKVD 217>NP_006501 Length = 513 Score = 15.8 bits (29), Expect = 7355 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 + QFTEK+ Sbjct: 291 LKQFTEKM 298>NP_001269332 Length = 296 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 ISQ T K+D Sbjct: 167 ISQCTPKVD 175>NP_001269333 Length = 231 Score = 15.8 bits (29), Expect = 7355 Identities = 6/9 (66%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 ISQ T K+D Sbjct: 102 ISQCTPKVD 110>NP_631905 Length = 381 Score = 15.8 bits (29), Expect = 7355 Identities = 4/9 (44%), Positives = 9/9 (100%) Query: 1 ISQFTEKID 9 +++FTEK++ Sbjct: 224 VNRFTEKLN 232>NP_775899 Length = 4462 Score = 15.8 bits (29), Expect = 7355 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISQFTEKID 9 ++QF E+ID Sbjct: 1032 LAQFQEQID 1040>NP_001136157 Length = 2087 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SQFTEKI 8 S FTEK+ Sbjct: 881 SSFTEKV 887>NP_055530 Length = 1738 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SQFTEKI 8 S FTEK+ Sbjct: 532 SSFTEKV 538>NP_060224 Length = 1440 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 +SQ+ EK D Sbjct: 310 LSQYFEKFD 318>NP_001264044 Length = 4516 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 + QF E+ID Sbjct: 1079 LEQFKEQID 1087>NP_004183 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQFTEKID 9 S+F EK+D Sbjct: 40 SKFKEKLD 47>NP_054872 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISQFTEKID 9 ISQ+TE ++ Sbjct: 63 ISQYTEALN 71>NP_001166945 Length = 605 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQFTEKID 9 S+F EK+D Sbjct: 40 SKFKEKLD 47>NP_001026786 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 ISQ TEK+ Sbjct: 61 ISQGTEKV 68>NP_001171922 Length = 1619 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1152 VSEFQEKI 1159>XP_005274840 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQFTEKID 9 S+F EK+D Sbjct: 40 SKFKEKLD 47>XP_005274491 Length = 621 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 2 SQFTEKID 9 S+F EK+D Sbjct: 40 SKFKEKLD 47>XP_005255329 Length = 958 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISQFTEKID 9 ISQ+TE ++ Sbjct: 63 ISQYTEALN 71>XP_006720940 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISQFTEKID 9 ISQ+TE ++ Sbjct: 63 ISQYTEALN 71>XP_005255327 Length = 971 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 8/9 (88%) Query: 1 ISQFTEKID 9 ISQ+TE ++ Sbjct: 63 ISQYTEALN 71>XP_006719916 Length = 1482 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1015 VSEFQEKI 1022>XP_006719915 Length = 1531 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1064 VSEFQEKI 1071>XP_006719914 Length = 1639 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1172 VSEFQEKI 1179>XP_005266530 Length = 1643 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1176 VSEFQEKI 1183>XP_006719913 Length = 1650 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1225 VSEFQEKI 1232>XP_006719912 Length = 1672 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1205 VSEFQEKI 1212>XP_006719911 Length = 1688 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1221 VSEFQEKI 1228>XP_006719910 Length = 1692 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1225 VSEFQEKI 1232>XP_006719909 Length = 1692 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1225 VSEFQEKI 1232>XP_006719010 Length = 1436 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SQFTEKI 8 S FTEK+ Sbjct: 230 SSFTEKV 236>XP_005271793 Length = 2061 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 6/7 (85%) Query: 2 SQFTEKI 8 S FTEK+ Sbjct: 855 SSFTEKV 861>XP_006715189 Length = 1240 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 +SQ+ EK D Sbjct: 310 LSQYFEKFD 318>XP_006715188 Length = 1400 Score = 15.4 bits (28), Expect = 9605 Identities = 5/9 (55%), Positives = 7/9 (77%) Query: 1 ISQFTEKID 9 +SQ+ EK D Sbjct: 310 LSQYFEKFD 318>NP_055634 Length = 708 Score = 15.4 bits (28), Expect = 9605 Identities = 5/7 (71%), Positives = 7/7 (100%) Query: 1 ISQFTEK 7 +SQ+TEK Sbjct: 1 MSQYTEK 7>NP_112567 Length = 1623 Score = 15.4 bits (28), Expect = 9605 Identities = 5/8 (62%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 +S+F EKI Sbjct: 1156 VSEFQEKI 1163>NP_000686 Length = 385 Score = 15.4 bits (28), Expect = 9605 Identities = 6/8 (75%), Positives = 7/8 (87%) Query: 1 ISQFTEKI 8 ISQ TEK+ Sbjct: 61 ISQGTEKV 68>NP_065126 Length = 373 Score = 15.4 bits (28), Expect = 9605 Identities = 6/7 (85%), Positives = 6/7 (85%) Query: 1 ISQFTEK 7 ISQ TEK Sbjct: 40 ISQLTEK 46Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.316 0.133 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 440,646 Number of extensions: 637 Number of successful extensions: 48 Number of sequences better than 10000.0: 48 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 48 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (15.7 bits) S2: 28 (15.4 bits)
|
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |