Blast-Search of mutated query peptide against human proteome |
BLASTP 2.2.15 [Oct-15-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= User_input (9 letters) Database: HUMAN_PROTEOME_FASTA 71,491 sequences; 45,948,801 total letters Searching..................................................doneScore E Sequences producing significant alignments: (bits) Value NP_001138389 17 2528 NP_001138390 17 2528 NP_001138386 17 2528 NP_001138387 17 2528 NP_000132 17 2528 NP_075259 17 2528 NP_001138388 17 2528 NP_001138391 17 2528 NP_001138385 17 2528 NP_075418 17 2528 XP_006717776 17 2528 XP_006717775 17 2528 XP_006717774 17 2528 XP_006717773 17 2528 XP_006717772 17 2528 XP_006717771 17 2528 NP_001157745 15 9605 XP_005254311 15 9605 XP_006720508 15 9605 XP_006720507 15 9605 XP_005254309 15 9605 XP_005254306 15 9605 XP_005254305 15 9605 XP_005254304 15 9605 XP_005254303 15 9605 XP_006720506 15 9605 XP_005254302 15 9605 XP_005254301 15 9605 XP_006720505 15 9605 XP_005254300 15 9605>NP_001138389 Length = 705 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_001138390 Length = 704 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_001138386 Length = 709 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_001138387 Length = 707 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_000132 Length = 821 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_075259 Length = 822 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_001138388 Length = 706 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_001138391 Length = 680 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_001138385 Length = 769 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>NP_075418 Length = 732 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 8 ICLVVVTMA 16>XP_006717776 Length = 806 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 27 ICLVVVTMA 35>XP_006717775 Length = 726 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 27 ICLVVVTMA 35>XP_006717774 Length = 752 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 27 ICLVVVTMA 35>XP_006717773 Length = 807 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 27 ICLVVVTMA 35>XP_006717772 Length = 838 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 27 ICLVVVTMA 35>XP_006717771 Length = 839 Score = 17.3 bits (33), Expect = 2528 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 1 ISLVVVTMA 9 I LVVVTMA Sbjct: 27 ICLVVVTMA 35>NP_001157745 Length = 3065 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1697 SLVVVTAA 1704>XP_005254311 Length = 1627 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 258 SLVVVTAA 265>XP_006720508 Length = 2658 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1289 SLVVVTAA 1296>XP_006720507 Length = 2763 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1394 SLVVVTAA 1401>XP_005254309 Length = 2956 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1587 SLVVVTAA 1594>XP_005254306 Length = 3066 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1697 SLVVVTAA 1704>XP_005254305 Length = 3114 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_005254304 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_005254303 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_006720506 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_005254302 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_005254301 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_006720505 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753>XP_005254300 Length = 3115 Score = 15.4 bits (28), Expect = 9605 Identities = 7/8 (87%), Positives = 7/8 (87%) Query: 2 SLVVVTMA 9 SLVVVT A Sbjct: 1746 SLVVVTAA 1753Database: HUMAN_PROTEOME_FASTA Posted date: May 26, 2014 10:46 AM Number of letters in database: 45,948,801 Number of sequences in database: 71,491 Lambda K H 0.336 0.136 0.305 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 71491 Number of Hits to DB: 217,090 Number of extensions: 207 Number of successful extensions: 30 Number of sequences better than 10000.0: 30 Number of HSP's gapped: 30 Number of HSP's successfully gapped: 30 Length of query: 9 Length of database: 45,948,801 Length adjustment: 0 Effective length of query: 9 Effective length of database: 45,948,801 Effective search space: 413539209 Effective search space used: 413539209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 28 (16.4 bits) S2: 28 (15.4 bits)
CANCERTOPE | Raghava's Group | IMTECH | CSIR | CRDD | GPSR Package |